Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0536 ATGAAGCCCTTGATGCCGAAAATGACATCCAACTTCAGGCTCAACCATTTGTCTTTGCTCTGTTTCATACCTCTGTTTCTCCCACACTCAACTGCAGTCGACATCTTAAAATCAGGGCAATCCATTAACGACACCCAAGTAATTGTTTCAGCCGCCGAAAAGTTTGAATTGGGATTCTTCACTCAGCCCAAGTCCTCCAGTTTCAAGTATTTAGGAATCTGGTACAAGAGCCTTCCCGACTACGCCGTTTGGGTGGCAAACAGAGACAACCCAATTCTCAACTCCTCTGCCACTCTAAAATTCAATACAGATGGAAACTTGATTCTCGTCAATCAAACAGGTGAAGTTTTTTGGTCTTCAAATTCAACAAGTTCACTTAAAAATCCAATCGCTCAATTGCTAGATACAGGTAATTTCATTCTGAGAGATTCAAATTCACGATCTGACAATCATGTCTGGCAGAGTTTTGATTACCCCTTTGATACTCTGCTACCGGAAATGAAACTGGGTTGGGACTCCAAAACAGGGCTTAACCGGAAGTTAACATCAAGAAAGAATGAAAACGATCCGTCCTCTGGAGAATTTAGTTATGAAGTCAACACAGATGGGCTTGCTGAACTTGTGGTTCGTAAAGCAAACAAGACGATGTTTAGGGGAGGACCATGGTTTGGCGATGGTTTTACCCGACGTCGATCCACCGGAGGGATTTTCATATATAATTCTTCATATGAGGTATCATTTTCATATAATGCTCCAGACAATAACCCATCAAGAGTTGTGTTGGATGCAAGTGGGTCTGTTGAACACTCTATCTGGAGCGAAGAGGAGAAAGCATGGCGTAAAACATACACGTTTGAAGGATCTGGCTGCAACGACTACGATTTATGTGGAAATTTTGGTCTTTGTAGCTCTGTCTTAGTAGCAAGCTGTGGCTGTTTAGATGGGTTTAAACAGAAATCAACCCAAAATTTTTCAGATGGGTGTGTGAGAAAGGATGAAAAAATTTGTAGAGAAGGAGAAGGATTTAGAAAGATAAGTGATGTGAAATGGCCAGATTCCAGTGGGAAGTCAGTGAAATTGAAAATGGGTATTCAAAATTGCGAAACAGAGTGCTTGAATGATTGTCTTTGCTTGGCTTATGGCAAACTGGAAATTCCTAATATTGGGTCTGCCTGTGTCACCTGGTTTAACAAATTGATTGATATTAGATTTGTTCGTGATGTTGGAACTGGAGATGATCTCTTTGTGAGAGTGGCTGCTTCAGAATTAGAATGGAGTGAGAGGAGGAAGAGTATAATAGTTCCGGTGGTTGTGCCAATCGTGTCAGTGATAATCTTCTTGGCTTTAATCACCCTTTTTATCATTAGGAATGTAAGAAGAAGAGCTAAAGATAATGGAGTTGCAATCACTGAGGATCTAATTCATGAGAATGAACTTGAGATGCCAATTGGGTTAATTGAAGCTGCGACCAACAATTTCTCAATTTCTAATAAGATAGGAGAAGGGGGTTTTGGACCTGTTTATAAGGGCAGACTCCCATGTGGACAAGAAATTGCGGTAAAGAAGCTAGCCGAAAGATCTCGTCAAGGATTGGAGGAGTTTAAAAATGAGGTCCTTTTCATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCTAACAAAAGTTTGGACTACTTCCTTTTTGATGACGGAAGACGTTGTTTACTTCATTGGCAAATGAGAATTGATATCATAATTGGCATTGCTCGAGGCCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATTATTCATAGAGATCTCAAAGCTGCCAATATTTTATTAGATAGCGAAATGATGCCAAAAATCTCAGACTTTGGCATTGCACGTATGTTTGGTGAAGGTCAAATGGAAACAAAAACAAATAGAGTTATTGGGACCTACGGTTATATGTCTCCAGAATATGCCATGGAAGGTTTCTTTTCATTCAAATCTGATGTTTATAGCTTTGGAGTTATGGTTTTAGAAATAGTTAGTGGTAAGAGGAACCAAGGTTATTTTATTCACTCGGAACACGAAATGAATCTTCTTGGACACGCATGGAAACTTTGGAATGAAGGAAGGAGCTTGGAATTAGTAGATGGAGTGTTGGGTGATCAATTCCAAGAATATGAAGCACTAAAATATATAAATATTGGACTTTTATGTGTTCAAGCACATCCGAGAGAAAGACCAATTATGTCATCTGTGCTTTCAATGTTAGAAAATGATAACATGTCCTTCATTCATCCAAAAAGACCTGGATTCAATGGGGAAAGATTTTTATTGTATGATATTGATTCATCATTAGATGATAAATCAACTCCTACTTCAAATAATGTTACTATTACATTGTTAGACGATGGTCGCTAA 2445 38.73 MKPLMPKMTSNFRLNHLSLLCFIPLFLPHSTAVDILKSGQSINDTQVIVSAAEKFELGFFTQPKSSSFKYLGIWYKSLPDYAVWVANRDNPILNSSATLKFNTDGNLILVNQTGEVFWSSNSTSSLKNPIAQLLDTGNFILRDSNSRSDNHVWQSFDYPFDTLLPEMKLGWDSKTGLNRKLTSRKNENDPSSGEFSYEVNTDGLAELVVRKANKTMFRGGPWFGDGFTRRRSTGGIFIYNSSYEVSFSYNAPDNNPSRVVLDASGSVEHSIWSEEEKAWRKTYTFEGSGCNDYDLCGNFGLCSSVLVASCGCLDGFKQKSTQNFSDGCVRKDEKICREGEGFRKISDVKWPDSSGKSVKLKMGIQNCETECLNDCLCLAYGKLEIPNIGSACVTWFNKLIDIRFVRDVGTGDDLFVRVAASELEWSERRKSIIVPVVVPIVSVIIFLALITLFIIRNVRRRAKDNGVAITEDLIHENELEMPIGLIEAATNNFSISNKIGEGGFGPVYKGRLPCGQEIAVKKLAERSRQGLEEFKNEVLFISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDGRRCLLHWQMRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMMPKISDFGIARMFGEGQMETKTNRVIGTYGYMSPEYAMEGFFSFKSDVYSFGVMVLEIVSGKRNQGYFIHSEHEMNLLGHAWKLWNEGRSLELVDGVLGDQFQEYEALKYINIGLLCVQAHPRERPIMSSVLSMLENDNMSFIHPKRPGFNGERFLLYDIDSSLDDKSTPTSNNVTITLLDDGR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5573850 5577163 - ClG42_03g0053600.10 Clacu03g0536 245101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0536 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0536 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Clacu03g0536 814 Gene3D - 29 156 IPR036426 -
Clacu03g0536 814 SMART serkin_6 493 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0536 814 ProSiteProfiles Bulb-type lectin domain profile. 33 154 IPR001480 -
Clacu03g0536 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 26 779 - -
Clacu03g0536 814 Pfam Protein tyrosine and serine/threonine kinase 495 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0536 814 SMART blect_4 39 159 IPR001480 -
Clacu03g0536 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 773 - -
Clacu03g0536 814 Pfam S-locus glycoprotein domain 217 319 IPR000858 GO:0048544(InterPro)
Clacu03g0536 814 ProSiteProfiles Protein kinase domain profile. 493 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0536 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 568 - -
Clacu03g0536 814 Pfam PAN-like domain 336 402 IPR003609 -
Clacu03g0536 814 Gene3D Transferase(Phosphotransferase) domain 1 569 775 - -
Clacu03g0536 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 156 - -
Clacu03g0536 814 CDD PAN_AP_plant 336 419 - -
Clacu03g0536 814 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Clacu03g0536 814 CDD STKc_IRAK 499 767 - -
Clacu03g0536 814 SUPERFAMILY Protein kinase-like (PK-like) 482 781 IPR011009 -
Clacu03g0536 814 PIRSF SRK 5 812 IPR024171 GO:0004674(InterPro)
Clacu03g0536 814 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Clacu03g0536 814 Pfam D-mannose binding lectin 83 185 IPR001480 -
Clacu03g0536 814 CDD B_lectin 40 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0534 Clacu-Chr3:5558830 Clacu03g0536 Clacu-Chr3:5573850 6.50E-233 dispersed
Clacu03g0536 Clacu-Chr3:5573850 Clacu05g1668 Clacu-Chr5:25126069 7.60E-196 dispersed
Clacu03g0535 Clacu-Chr3:5565782 Clacu03g0536 Clacu-Chr3:5573850 2.10E-259 tandem
Clacu03g0536 Clacu-Chr3:5573850 Clacu03g0537 Clacu-Chr3:5583410 1.70E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73420 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0536 - - - 0.0