Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0537 ATGAAACCCATCACCAACACCATTCCATTAATCCTTCTTCTCCTCTGCTTTGTTTTGAAATTTTCCAGCAGCATAGATACGATCACATCTACACAATTCCTCAAAGATCCCGAAGCTGTATTGTCCAATCGTGGCTTCTTCGAATTGGGTTTCTTCAGCCCTCCCAATTCCACCGATCGGTTCGTCGGAATTTGGGATAAACGAGTGCCTGTACGAACTGTTTTCTGGGTAGCTAACAGAGACGAGCCTCTCAACAACAAATCAGGGGTTTTCGCCGTATCCAACGACGGGAATCTCGTAGTATTAGATGAACACAATAAAATTCTTTGGAACTCCAATGTTTCTAACGCTGTAGTGAACTCCACCGCTCGTCTTCTTGATTCTGGAAACCTTGTTCTGCAGGACTCTGTTTCAGGGACCGTCATTTGGGAGAGTTTCAAAGACCCATCAGACAAATTCTTGCCAATGATGAAATTCATCACGAACTCAATCACAAACGAGAAAGTAGAAATCGTGTCGTGGAAAACCCCATCTGATCCATCTTCAGGAAATTTCTCCTTTGGAATCGACCCTCTGACGATCCCCGAAGTTATAATTTGGAAAAACAGCCGCCCGTATTGGAGGTCCGGTCCATGGGACGGCCAAGTTTTCATCGGAATACCCGGTATGAACACCGACTATCTTTCTGGAGGTAATCTCGTAATCGAAAACAAAACTTACTCTCTCTCAATTGCCAATGCAAACGAAGCTCAGTTATTCTACTACTACTTGAACCCAAATGGTAATTTGGAAGAGAATCGTTGGAATATTAAGGATCAAAAATACGAGATAGCTTGGTCAGCTCCTGAAACAGAGTGTGATGTTTATGGTGCTTGTGGAGCATTTGGGGTTTGTGATTCTCAAAGAACCCCAATTTGCAGTTGTTTGAGGGGTTTTAAGCCAGAGAAGGAAGAAGAATGGAACAGAGGAAATTGGAGAAATGGGTGTGTGAGGAATTCACCATTGGAGTGTGAAAAGAAGAACATCAATGTTGAAATAGGAAAACATGAGGATGGGTTTCTGAAAATGGGAATGGTTAAAGTTCCAGATTCTGCAGCTTGGATTTTAGCTTCGGAAAATGAGTGCAGAGTCCAGTGTTTGTCAAACTGTTCTTGTTCTGCATATGCATATAGAACAGGGATTGGTTGTATGATGTGGAGAAGAGATTTAATTGACATTCAACAGTTCAAGAATGATGGAGCAGACATTTATGTTCGTGTGGCATATTCAGAAATAGCTGATGAAAGTGGAATCACCAAAGACATGAAATTAGTCATCATAACTTCTGTGGTAACAGGAAGCTTCATACTTATCTGCTGCATATATTGCTTATGGAAAAGGAAAAGGCAGATCAAGTTTTTGATGAACACTGGTGGTGATATGAAGCATGATAAAGTGAATGAAGTTAAGCTTCAGGAGCTGCCTCTTTTTGATTTTGAGAAGCTGGCAATTGCAACTAACCACTTTCATTTCAATAACAAGATTGGTCAGGGTGGGTTTGGGTCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGACTTTCAAAGACCTCTGGACAAGGGCTTGAAGAGTTTACAAATGAAGTGATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGAGGGAGAAGAAAGAATGTTAGTTTATGAGTACATGCCAAATGGAAGCTTAGATTCAATTATTTTTGATTCAACTAAAGCCAAAGTGTTAGATTGGCGAAAAAGATTTAAGGTCGTTGAAGGAGTTGCTCGAGGACTACTTTATCTCCATAGAGATTCGAGACTAAAAATCATTCATAGAGATCTAAAAGCCAGTAACATTTTACTAGATCGAGATTTAAATCCCAAAATTTCAGATTTTGGTACTGCTAGAATTGTTTACGGCAATGAAGCTCAAGCTAATACCACGAGAGTTATTGGTACTTATGGCTATATGTCTCCGGAATACGTGTTGAATGGCCAATTTTCAGAGAAGTCAGATGTGTTTAGCTTTGGAGTTTTGTTGCTTGAAATTATTAGTGGAAGAAAAAATACAAGCTTCTATGATAATGAACACGCCTTGAGCCTTCTAGGATTTGCATGGAAATTATGGATGGAGGACAATTCAGTTGCTTTGATTGATCAAACAACGTTTGAATTGTGTTGTCAAGCAGAGATTTTGAGGTACATTCATGTAGGATTATTGTGTGTTCAAGAATTGGCAAAGGATAGACCAAATATGACGACAATTCTTTCGATGTTGCACAATGAGATCACAGTTCTTCCAATACCAAAGCAACCAGGATTTAGTAGTAGGCAAATTGAGATTCATACTCAGGCATTCCAACAAAATCATGTTGGAGCTTGCTCCCCAAACATGATCACGCTTACCTCATTTGATGGTCGATAG 2466 39.82 MKPITNTIPLILLLLCFVLKFSSSIDTITSTQFLKDPEAVLSNRGFFELGFFSPPNSTDRFVGIWDKRVPVRTVFWVANRDEPLNNKSGVFAVSNDGNLVVLDEHNKILWNSNVSNAVVNSTARLLDSGNLVLQDSVSGTVIWESFKDPSDKFLPMMKFITNSITNEKVEIVSWKTPSDPSSGNFSFGIDPLTIPEVIIWKNSRPYWRSGPWDGQVFIGIPGMNTDYLSGGNLVIENKTYSLSIANANEAQLFYYYLNPNGNLEENRWNIKDQKYEIAWSAPETECDVYGACGAFGVCDSQRTPICSCLRGFKPEKEEEWNRGNWRNGCVRNSPLECEKKNINVEIGKHEDGFLKMGMVKVPDSAAWILASENECRVQCLSNCSCSAYAYRTGIGCMMWRRDLIDIQQFKNDGADIYVRVAYSEIADESGITKDMKLVIITSVVTGSFILICCIYCLWKRKRQIKFLMNTGGDMKHDKVNEVKLQELPLFDFEKLAIATNHFHFNNKIGQGGFGSVYKGKLVDGQEIAVKRLSKTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEGEERMLVYEYMPNGSLDSIIFDSTKAKVLDWRKRFKVVEGVARGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIVYGNEAQANTTRVIGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLEIISGRKNTSFYDNEHALSLLGFAWKLWMEDNSVALIDQTTFELCCQAEILRYIHVGLLCVQELAKDRPNMTTILSMLHNEITVLPIPKQPGFSSRQIEIHTQAFQQNHVGACSPNMITLTSFDGR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5583410 5586416 - ClG42_03g0053700.10 Clacu03g0537 245102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0537 821 Pfam Protein tyrosine and serine/threonine kinase 503 770 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0537 821 CDD B_lectin 31 149 IPR001480 -
Clacu03g0537 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0537 821 CDD STKc_IRAK 508 773 - -
Clacu03g0537 821 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524(InterPro)
Clacu03g0537 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Clacu03g0537 821 CDD PAN_AP_plant 334 421 - -
Clacu03g0537 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 788 - -
Clacu03g0537 821 Pfam PAN-like domain 348 406 IPR003609 -
Clacu03g0537 821 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Clacu03g0537 821 SMART blect_4 31 149 IPR001480 -
Clacu03g0537 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 474 577 - -
Clacu03g0537 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Clacu03g0537 821 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Clacu03g0537 821 Gene3D - 21 146 IPR036426 -
Clacu03g0537 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Clacu03g0537 821 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544(InterPro)
Clacu03g0537 821 SMART ntp_6 348 420 IPR003609 -
Clacu03g0537 821 Pfam D-mannose binding lectin 73 175 IPR001480 -
Clacu03g0537 821 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Clacu03g0537 821 Gene3D Phosphorylase Kinase; domain 1 475 577 - -
Clacu03g0537 821 SMART serkin_6 502 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0537 821 PIRSF SRK 2 821 IPR024171 GO:0004674(InterPro)
Clacu03g0537 821 ProSiteProfiles Protein kinase domain profile. 502 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0537 821 SUPERFAMILY Protein kinase-like (PK-like) 487 799 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1167 Clacu-Chr2:23331377 Clacu03g0537 Clacu-Chr3:5583410 3.30E-148 dispersed
Clacu03g0537 Clacu-Chr3:5583410 Clacu03g0539 Clacu-Chr3:5598385 1.60E-286 dispersed
Clacu03g0536 Clacu-Chr3:5573850 Clacu03g0537 Clacu-Chr3:5583410 1.70E-163 tandem
Clacu03g0537 Clacu-Chr3:5583410 Clacu03g0538 Clacu-Chr3:5591091 6.10E-270 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73421 PF07714 PK_Tyr_Ser-Thr 5.00E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0537 - - - 0.0