Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0538 ATGAAACCCCGAAAAAGGACTAACTTCTTTCATCTTCATCTTCATCTTTTGCTTTTCTGCTTCGGTTTAAGATTCTGCATCGCTAGAAATATCATCACATCAACGAACTTCATCACAGACCCTTCAACTCTGTTATCTGAAAGCAGTTTCTTCGAGTTGGGATTTTTTAGCCCTGTTAATACAACGAGCCGATATGTCGGAATATGGCTCAATCAAGGTTCTAAGCTCACTGTCGTATGGGTAGCTAACAGAGACAACCCTCTAAACCATACTTCTGGGGTTTTCACTATTTCCAAGGATGGAAATCTCGTTGTATTAGACGGAAAGAGTAACATTCTTTGGACTTCAAACATTCTAAGCCCTACGATTAACTCGACTGCTCTGCTTTTAGATTCTGGTAATCTTATTTTACAAGACTCTGTTTCTGGGATGATTCTATGGGAGAGTTTCAAACATCCCTCTGATACATTCTTTCCAGCCATGAAAATTTTCACAAACACAAGAACTAAAGAGAAAATAGGGTTGACATCGTGGCAAGGCCCTTCTAATCCATCGAAAGGGCGTTTCTTCTTCGGCATCGATGTTCTGAATAACATTGCTGAAGCTTACATTTGGGAAGGCAGTGATCTGCGTTGGAGATCTGGTCCATGGAATGGCCAATCTTTCATTGGCATACCCCAGATGGATTCTGTTTATTATCTCCTTGGTTTCAGTCTCCTAATTGAAAACCAAACTTACTATCTCTCTGGTCCAAATAGAAATGAGCTGCTCAATTATGAGTTTTATCAGTTAACCTCACAGGGGAATTTTGAGCAATCGCATTGGGATGATACATTGAAGGACTGGAAACCTAGATGGTCAGCTCTAAAAACTCCGTGTGATTTCTATGGAACTTGTGGGGCGTTTGGAATCTGTGATCCAAAATCATTCCCTGTTTGCAGTTGTTTAAAAGGGTTTCAGCCAAAGAATGAGGAGGAATGGAATCAAGGAAATTGGGGAAGTGGGTGTTTGAGAAAGACATCATTGAAGTGTGAGAAAGTGAAAAACGTGAGTGTTGAACATGGCAAGGAAGATGGATTTTTGAAAGTGGGAACAGTTAATTTACCAAATTTTGCAGAGTCGTTGAATTCCTCTGTTTCAGCAGAGGATTGCGGGGTTAAGTGCTCGGATGATTGTTCATGTTCTGCTTATGCTTATGAAAGTGGCATTGGCTGCATGCTATGGAGTGGGGATTTGATCGACGCTCGAAAGCTCGATTTTGGTGGAGCTACTTTTTACCTTAGATCGACATATTCGGAATTAGAGAATGCTACAAAAAGGTCGAAAGTGATCGTAATAGCTTCAGTGATAGCTGGAAGTGGATCACTAATCATCATCTTCATCATATTCGTCTCATGGAGAAGGATAATTGGCCAAAAAGCAAAGGAAGAGATCAGAAAAGGCAAGAAGACGATATTGTTAAAGGAGAGGAGGAAATTTTTGAACTTGGTGATGGATCACAGAATGGGAATCAATATGAATCAAGAATTACCAACTTATAACTTTGAGAAGCTGGCAATTGCAACAAACAATTTTCATTTAGATAACAAGCTTGGAAAGGGAGGATTTGGGCCAGTGTATAAGGGAAGGTTGGTGGATGGCCAAGAAATAGCTATAAAAAGACTCTCAAGAGCGTCTAATCAAGGGGTTGAAGAATTTATAAATGAAGTAACAGTGATTTCAAAACTCCAACATAGAAATCTTGTTCGGCTCTTTGGTTATTGTGTTGAGGGAGAAGAGAAGATGTTGATATACGAGTACATGCCAAACCTAAGTTTGGATGCATTTATCTTTGATCCCTCCAAACAAAAACTTTTAGATTGGAGAAAAAGGTTTGATATTATTATGGGAATTGCTCGAGGCCTCCTTTATCTTCACAAAGATTCTAGATTGAAGATCATCCATAGAGATCTAAAAGCTAGTAACATCCTCCTGGACGAAAATTTTAATTCCAAAATTTCGGATTTTGGTATGGCACGAATTTTTGACAACCAAGAAGATCAAGCCAATACTATAAGGGTTGTTGGAACCTACGGCTACATGTCTCCTGAATATGCCATGGGAGGTCGATTTTCAGAGAAATCAGATGTATTTAGCTTTGGAGTTTTGTTACTTGAAATAATTAGTGGGAAGAAAAATTCAAGTTTTTACCACGATGAGGATGTTCTAAGCTTATTAGAATTGGCATGGAACTTATGGAACGAAGAGAATCTAATTTTTTTGATTGATCCAACAATCTATGATTCGCGCCATCATAAAGAAATTTTGAGATGCATTCACGTAGGACTCTTGTGCGTTCAAGAAGCCATGAAGGATAGGCCAAATATGGTAACCGTTCTTTCAATGCTCAATAGTGAAATTATAGATCTTTATCCTCCAAAACAACCTGGTTTTAGTGGCATGCAACTTGAGAGCAATACACATTTATCTCAACAAAGTGAGGATAAATATTCTGTAAATATGGTTACAATGACCAAATTAGGAGGACGGTAG 2532 38.74 MKPRKRTNFFHLHLHLLLFCFGLRFCIARNIITSTNFITDPSTLLSESSFFELGFFSPVNTTSRYVGIWLNQGSKLTVVWVANRDNPLNHTSGVFTISKDGNLVVLDGKSNILWTSNILSPTINSTALLLDSGNLILQDSVSGMILWESFKHPSDTFFPAMKIFTNTRTKEKIGLTSWQGPSNPSKGRFFFGIDVLNNIAEAYIWEGSDLRWRSGPWNGQSFIGIPQMDSVYYLLGFSLLIENQTYYLSGPNRNELLNYEFYQLTSQGNFEQSHWDDTLKDWKPRWSALKTPCDFYGTCGAFGICDPKSFPVCSCLKGFQPKNEEEWNQGNWGSGCLRKTSLKCEKVKNVSVEHGKEDGFLKVGTVNLPNFAESLNSSVSAEDCGVKCSDDCSCSAYAYESGIGCMLWSGDLIDARKLDFGGATFYLRSTYSELENATKRSKVIVIASVIAGSGSLIIIFIIFVSWRRIIGQKAKEEIRKGKKTILLKERRKFLNLVMDHRMGINMNQELPTYNFEKLAIATNNFHLDNKLGKGGFGPVYKGRLVDGQEIAIKRLSRASNQGVEEFINEVTVISKLQHRNLVRLFGYCVEGEEKMLIYEYMPNLSLDAFIFDPSKQKLLDWRKRFDIIMGIARGLLYLHKDSRLKIIHRDLKASNILLDENFNSKISDFGMARIFDNQEDQANTIRVVGTYGYMSPEYAMGGRFSEKSDVFSFGVLLLEIISGKKNSSFYHDEDVLSLLELAWNLWNEENLIFLIDPTIYDSRHHKEILRCIHVGLLCVQEAMKDRPNMVTVLSMLNSEIIDLYPPKQPGFSGMQLESNTHLSQQSEDKYSVNMVTMTKLGGR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5591091 5594209 + ClG42_03g0053800.10 Clacu03g0538 245103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0538 843 Gene3D - 26 151 IPR036426 -
Clacu03g0538 843 PIRSF SRK 3 843 IPR024171 GO:0004674(InterPro)
Clacu03g0538 843 Pfam PAN-like domain 356 414 IPR003609 -
Clacu03g0538 843 Pfam D-mannose binding lectin 77 179 IPR001480 -
Clacu03g0538 843 SMART serkin_6 525 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0538 843 Pfam Protein tyrosine and serine/threonine kinase 526 740 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0538 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Clacu03g0538 843 SMART blect_4 35 153 IPR001480 -
Clacu03g0538 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 490 600 - -
Clacu03g0538 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 150 - -
Clacu03g0538 843 CDD B_lectin 35 153 IPR001480 -
Clacu03g0538 843 SUPERFAMILY Protein kinase-like (PK-like) 505 796 IPR011009 -
Clacu03g0538 843 ProSiteProfiles Protein kinase domain profile. 525 822 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0538 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 184 IPR036426 -
Clacu03g0538 843 CDD STKc_IRAK 531 797 - -
Clacu03g0538 843 ProSiteProfiles PAN/Apple domain profile. 344 430 IPR003609 -
Clacu03g0538 843 Gene3D Phosphorylase Kinase; domain 1 499 600 - -
Clacu03g0538 843 SMART ntp_6 355 429 IPR003609 -
Clacu03g0538 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 811 - -
Clacu03g0538 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0538 843 CDD PAN_AP_plant 355 428 - -
Clacu03g0538 843 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Clacu03g0538 843 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544(InterPro)
Clacu03g0538 843 Gene3D Transferase(Phosphotransferase) domain 1 601 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0538 Clacu-Chr3:5591091 Clacu03g0540 Clacu-Chr3:5606252 1.40E-280 dispersed
Clacu09g0257 Clacu-Chr9:2360026 Clacu03g0538 Clacu-Chr3:5591091 2.10E-68 dispersed
Clacu11g1737 Clacu-Chr11:28590634 Clacu03g0538 Clacu-Chr3:5591091 5.00E-73 dispersed
Clacu03g0537 Clacu-Chr3:5583410 Clacu03g0538 Clacu-Chr3:5591091 6.10E-270 tandem
Clacu03g0538 Clacu-Chr3:5591091 Clacu03g0539 Clacu-Chr3:5598385 5.50E-282 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73422 PF07714 PK_Tyr_Ser-Thr 4.80E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0538 - - - 0.0