Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0539 ATGACGAAACCCCAAATGAATTGGCGCTTTTCCGGTCGTCGTCTTCTTCTTCTTCTTTCACTAATTACATGCTTCTCTTCAAAGTTTTGCTATGGTGATACAATTACATCAGCTGATTTCATCAAATACCCTGCAACCAAAATTTCCAATGCCACTTCCTTCGAATTGGGCTGGTTCTCACCTCTTAATTCCACAGCCCAATACGTCGGAATTTGGTTCCATCAAGTTTCCATACAAACTATAGTATGGGTTGCTAACAAAGACACCCCTCTCAACAATACTTCCGGGATTTTCACCATCTCCAACGATGGAAATCTTGTGATCTTAGACGAAAACAACACCATCATTTGGTCTTCAAATGTTACTTCTCCTACAGTCAACACAACCGCCCGAATTCTAGATTCAGGCAACCTTGTCTTGGAAGATCCTGCTTCCGGATTGGTTATTTGGGAGAGTTTCAAACACCCTTCCAATATATTCTTGCCTTCCATGGAGCTTGTCACAAACAAAAGAACTCAAGAGAAGCTTGAAATTACTTCATGGAAAACCCCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCGTTGGATGTTGTTAATATTCCTGAAGCTGTGATTTGGAATAATGGAGGTAACCCATATTGGAGATCTGGTCCATGGAACGGTCATACTTTTATTGGAATACCCGAAATGATCTCTGTTTATCTCATTGGGTTTAATCTTGCGATTGAAGACCAAATTTATTATTTCTCAATTACTTACAATAATGACAATCAATTACTTTATACCATGGTATTAAGCCCAGAAGGGAATTTGGAGCAACAGTATTGGAATTCTTCGAAGAAAAATTGGGAAGCGAGTTGGTCGGCTTTTAGAACAGAATGTGATTATTACGGTGTTTGTGGTGCGTTTGGGGTCTGTAATGCGAATGCATCCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCAAAGGATGAGAAGGAATGGAATCGAGGAAATTGGAGTAATGGGTGTGTGAGAAATACGGCATTGCAGTGTGAGAAGTCCAATAACGCCACTACCAGCGGTGAGGAAGATGGATTTTTGGAAGTGGAATTGGTTAAAGTTCCATCTTTGGCAGAGTGGTCTAATTTCTCTACTTCAGCGGATGATTGCAAACAAGAATGCTTTGAGAATTGCTTGTGTAGTGCTTATGCATATGAAAATGGTATTGGTTGTATGCTATGGAAAAGGGACTTAATTGATGTACAGAAATTTGAAAGCCTTGGATCCAATCTTCATCTTCGACTGGCTCATGCAGACTTGCAAACAATTAATGATGTAAAAAGCAAGAGTACAGGAATTATTATAGCCATAGTGCTACCAGCAACACTTATGATCTTCATCATTGCCGTATACTTGTGGTGGAGATGGAAGGCTAGCAAAAATGAGCATAGCAAAAAAGGGGGAAGACTGAAGTTGAGAAGCGATGACATGATTGGGGACCAAAGTAAATTTGAAGAACTACCTCTTTATGATTTTGAGAAGCTGGCAATTGCAACAAACAGTTTTGATTTAAGTCAAAAACTTGGACAAGGTGGCTTTGGTCCCGTATATAAGGGAAGATTGCTAGATGGACAAGAAATAGCAATAAAAAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGATTGTGATTTCTAAACTACAGCATAGAAATCTTGTTCAGCTTCTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGCTAATATATGAGTATATGCCCAACCTAAGTCTGGATGCATTCATTTTTGACTCTACCAAACAAAAACTCTTAGATTGGAGAAAAAGATTTAACATTGTTGATGGAATTGCTCGAGGTCTCCTTTACCTCCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTATTAGACAAAGATATGAATCCTAAAATTTCAGACTTTGGTATGGCAAGAATTTTTGGCAGTAATGAAGTGGAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCCGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTATTACTTGAAATTATAAGTGGAAAAAGGAACACAGGATTCAATCGCCATGAACATGCTTTAAGCTTATTGGAATTTGCATGGAAGTTGTGGATAGAAGACAATCTTATTGCTTTGATCGATCCCACAATGCATGAGTTGTGTTATCAATCAGAAATTTTGCGGTGCATCCAAGTAGGACTCTTATGTGTTGAAGAATCTATAAATGATAGACCAAATGTTGTTGCCATTATTTCAATGCTGAACAGTGAAATTGTAGATCTTCCTATTCCAAAGCAGCCTAGCTTTATTGGCAGACCAACTCAAAGTAATGATTTGTCTATGATGCAGCCGCATTGCCAAAATTTGATGTGA 2475 38.18 MTKPQMNWRFSGRRLLLLLSLITCFSSKFCYGDTITSADFIKYPATKISNATSFELGWFSPLNSTAQYVGIWFHQVSIQTIVWVANKDTPLNNTSGIFTISNDGNLVILDENNTIIWSSNVTSPTVNTTARILDSGNLVLEDPASGLVIWESFKHPSNIFLPSMELVTNKRTQEKLEITSWKTPSDPSTGNFSLALDVVNIPEAVIWNNGGNPYWRSGPWNGHTFIGIPEMISVYLIGFNLAIEDQIYYFSITYNNDNQLLYTMVLSPEGNLEQQYWNSSKKNWEASWSAFRTECDYYGVCGAFGVCNANASPVCSCLTGFKPKDEKEWNRGNWSNGCVRNTALQCEKSNNATTSGEEDGFLEVELVKVPSLAEWSNFSTSADDCKQECFENCLCSAYAYENGIGCMLWKRDLIDVQKFESLGSNLHLRLAHADLQTINDVKSKSTGIIIAIVLPATLMIFIIAVYLWWRWKASKNEHSKKGGRLKLRSDDMIGDQSKFEELPLYDFEKLAIATNSFDLSQKLGQGGFGPVYKGRLLDGQEIAIKRLSRASKQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSTKQKLLDWRKRFNIVDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTGFNRHEHALSLLEFAWKLWIEDNLIALIDPTMHELCYQSEILRCIQVGLLCVEESINDRPNVVAIISMLNSEIVDLPIPKQPSFIGRPTQSNDLSMMQPHCQNLM 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5598385 5603231 + ClG42_03g0053900.10 Clacu03g0539 245104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0539 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 153 - -
Clacu03g0539 824 ProSiteProfiles PAN/Apple domain profile. 346 431 IPR003609 -
Clacu03g0539 824 Gene3D - 27 154 IPR036426 -
Clacu03g0539 824 Pfam PAN-like domain 356 416 IPR003609 -
Clacu03g0539 824 PIRSF SRK 8 823 IPR024171 GO:0004674(InterPro)
Clacu03g0539 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 222 IPR036426 -
Clacu03g0539 824 CDD PAN_AP_plant 342 431 - -
Clacu03g0539 824 CDD B_lectin 54 156 IPR001480 -
Clacu03g0539 824 FunFam receptor-like serine/threonine-protein kinase SD1-8 490 592 - -
Clacu03g0539 824 Pfam D-mannose binding lectin 80 182 IPR001480 -
Clacu03g0539 824 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Clacu03g0539 824 SMART ntp_6 356 430 IPR003609 -
Clacu03g0539 824 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544(InterPro)
Clacu03g0539 824 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Clacu03g0539 824 SMART serkin_6 517 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0539 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Clacu03g0539 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 801 - -
Clacu03g0539 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0539 824 SMART blect_4 38 156 IPR001480 -
Clacu03g0539 824 CDD STKc_IRAK 523 789 - -
Clacu03g0539 824 Pfam Protein tyrosine and serine/threonine kinase 519 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0539 824 Gene3D Phosphorylase Kinase; domain 1 493 592 - -
Clacu03g0539 824 ProSiteProfiles Protein kinase domain profile. 517 824 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0539 824 SUPERFAMILY Protein kinase-like (PK-like) 501 817 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2319 Clacu-Chr1:34047119 Clacu03g0539 Clacu-Chr3:5598385 1.40E-211 dispersed
Clacu03g0537 Clacu-Chr3:5583410 Clacu03g0539 Clacu-Chr3:5598385 1.60E-286 dispersed
Clacu03g0539 Clacu-Chr3:5598385 Clacu03g0541 Clacu-Chr3:5628193 0.00E+00 dispersed
Clacu03g0538 Clacu-Chr3:5591091 Clacu03g0539 Clacu-Chr3:5598385 5.50E-282 tandem
Clacu03g0539 Clacu-Chr3:5598385 Clacu03g0540 Clacu-Chr3:5606252 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73423 PF07714 PK_Tyr_Ser-Thr 1.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0539 - - - 0.0