Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0540 ATGAATTCAAGCTTTTCCAGTCTTTTTCTTTTTCTTCTCCTTCTTTCATTAATTACATGCTTCTCTTCAAAGTTTTGCTATGGCAGCAATACAATTACATCAACTGATTTCATCAAATACCCTGCAACCAAAATTTCCAATGCCAACTCCTTCCAATTGGGCTGGTTCTCACCTATTAATTCCACAGCCCAATACGTCGGAATTTGGTACCATCAAGTTTCCCTAAAAACTATAGTATGGGTTGCTAACAAAGACAACCCTCTCAACAATACTTCCGGAATTTTCACCATCTCCAACCATGGAAATCTTGTGATCTTAGACGAAAACAACACCATCATTTGGTCTTCAAATGTTACTTCTCCTACAGTCAACACAACCGCCCGCATTCTAGATTCAGGCAACCTTGTCTTGGAAGATCCTGCTTCCAGATTGGTTATTTGGGGGAGTTTCAAACACCCTTCCAATATACTCTTGCCTTCCATGGAGCTTGTCACAAGCAAAAGAACTCAAGAGACGCTTGAAATTACTTCATGGAAAACCCCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCGTTGGATGTTGTTAATATTCCTGAAGCTGTGATTTGGAATAATGGAGGTAACCCATATTGGAGATCTGGTCCATGGAACGGTCATACTTTTATTGGAATACCCGAAATGATCTCTGTTTATCTCATTGGGTTTAATCTTGCTATCAAAGACCAAGTTTATTCTTTCTCAGTTTCTTACCATAACGACAATCAACTACTTTATAACATACGATTAAGCCCAAAAGGGAATCTAGTGCAGCAGTACTGGAATTCTTCGAAGAAAAATTGGGTTGGGACTTGGTCGGCTTTGAAAACACAATGCGATTATTACGGTGTTTGTGGTGCGTTTGGGCTCTGTAATGGCAAAGCGTCCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCAAAGGATGAAAAGGAATGGAAACGAGGGAATTGGAGTAATGGGTGTGTGAGAATTACGGCATTGCAGTGTGAGAAATCCAACAACCCCAACACCAGCGGTGAGGAAGATGGGTTTCTAAAAGTGGAATTTGTTAAAGTTCCATTTTTCTCAGAGTGCTCAAATTCCTCTACTTCAGCGGATAATTGCAAACAAAAGTGTTTTGAGAATTGCTTGTGTAGTGCTTATGCGTATGAAAATGGTATTGGTTGTATGCTATGGAGAAAAGACTTAATTGATGTACAGAAATTCGAAAGCCTTGGAGCCAGTCTTTACCTTCGACTGGCTCATGCAGACTTGCAAACAATTAATGATGTAAAAAGCAAGCGTGGAATTATTACAGTTATGGTGCTACTAGCAACGCTTATGATCGTCATCATTGCCATATACTCCCGGTGGAGATGGAAGGCTAGCCAAATTGAACTACCTCTTTATGATTTTGAGAAGCTGGCCATCGCAACAAACAACTTTGATTTAAGTAAAAAACTTGGACAAGGTGGCTTTGGTCCCGTATATAAGGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGAGAGTGATTTCAAAGCTACAACACAGGAATCTTGTAAGACTTTTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTACATGCCCAACCTAAGTTTGGATGCATTCATCTTTGGCTCTCCCAAACAACAAATTTTCGACTGGAGAAAACGATTCAATGTTATCAATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGGGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCGGATTTTGGCATGGCAAGAATCTTTGGTGGCGATGAAGTTGAAGCAAACACTTTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATATGCGATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTGTTACTTGAAATTATTAGTGGGAGAAGAAATACAGGATTCTACCTCCATGAAAATTGCATAAGCTTACTGGGATTTGCATGGAAATTGTGGACGGAAGACAATCTTATTCCTTTGATTGAACCAACAATATATGAACCGTGCTACAAATCAAATATTTTGAGATGCATTCATGTGGGACTCTTGTGTGTTCAAGAATTTATTAATGAGAGACCAAATATTTCCACCATCATTTCAATGCTTAATAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAACCTGGCTTTGTGGGCAGACCACATGAAAGTAACACAGAATCTTCTCAACAATCTTCTCAACAAAATTTAGATCAATATTCTATAAATAATGTTACACTTACAACAGTTATAGCACGCTAA 2436 38.01 MNSSFSSLFLFLLLLSLITCFSSKFCYGSNTITSTDFIKYPATKISNANSFQLGWFSPINSTAQYVGIWYHQVSLKTIVWVANKDNPLNNTSGIFTISNHGNLVILDENNTIIWSSNVTSPTVNTTARILDSGNLVLEDPASRLVIWGSFKHPSNILLPSMELVTSKRTQETLEITSWKTPSDPSTGNFSLALDVVNIPEAVIWNNGGNPYWRSGPWNGHTFIGIPEMISVYLIGFNLAIKDQVYSFSVSYHNDNQLLYNIRLSPKGNLVQQYWNSSKKNWVGTWSALKTQCDYYGVCGAFGLCNGKASPVCSCLTGFKPKDEKEWKRGNWSNGCVRITALQCEKSNNPNTSGEEDGFLKVEFVKVPFFSECSNSSTSADNCKQKCFENCLCSAYAYENGIGCMLWRKDLIDVQKFESLGASLYLRLAHADLQTINDVKSKRGIITVMVLLATLMIVIIAIYSRWRWKASQIELPLYDFEKLAIATNNFDLSKKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSPKQQIFDWRKRFNVINGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDEVEANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHENCISLLGFAWKLWTEDNLIPLIEPTIYEPCYKSNILRCIHVGLLCVQEFINERPNISTIISMLNSEIVDLPSPKQPGFVGRPHESNTESSQQSSQQNLDQYSINNVTLTTVIAR 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5606252 5619210 + ClG42_03g0054000.10 Clacu03g0540 245105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0540 811 Pfam Protein tyrosine and serine/threonine kinase 491 759 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0540 811 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Clacu03g0540 811 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544(InterPro)
Clacu03g0540 811 Gene3D Phosphorylase Kinase; domain 1 464 564 - -
Clacu03g0540 811 Gene3D Transferase(Phosphotransferase) domain 1 565 767 - -
Clacu03g0540 811 CDD PAN_AP_plant 339 428 - -
Clacu03g0540 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 564 - -
Clacu03g0540 811 Gene3D - 26 150 IPR036426 -
Clacu03g0540 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 565 768 - -
Clacu03g0540 811 MobiDBLite consensus disorder prediction 779 794 - -
Clacu03g0540 811 SMART ntp_6 353 427 IPR003609 -
Clacu03g0540 811 PIRSF SRK 1 811 IPR024171 GO:0004674(InterPro)
Clacu03g0540 811 ProSiteProfiles PAN/Apple domain profile. 343 428 IPR003609 -
Clacu03g0540 811 Pfam PAN-like domain 353 413 IPR003609 -
Clacu03g0540 811 CDD STKc_IRAK 495 761 - -
Clacu03g0540 811 MobiDBLite consensus disorder prediction 775 794 - -
Clacu03g0540 811 SMART blect_4 35 153 IPR001480 -
Clacu03g0540 811 ProSiteProfiles Protein kinase domain profile. 489 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0540 811 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 774 - -
Clacu03g0540 811 SUPERFAMILY Protein kinase-like (PK-like) 469 760 IPR011009 -
Clacu03g0540 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 150 - -
Clacu03g0540 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 218 IPR036426 -
Clacu03g0540 811 Pfam Domain of unknown function (DUF3403) 762 811 IPR021820 GO:0004674(InterPro)
Clacu03g0540 811 Pfam D-mannose binding lectin 77 179 IPR001480 -
Clacu03g0540 811 SMART serkin_6 489 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0540 811 CDD B_lectin 46 153 IPR001480 -
Clacu03g0540 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0538 Clacu-Chr3:5591091 Clacu03g0540 Clacu-Chr3:5606252 1.40E-280 dispersed
Clacu03g0540 Clacu-Chr3:5606252 Clacu05g1668 Clacu-Chr5:25126069 5.80E-188 dispersed
Clacu03g0539 Clacu-Chr3:5598385 Clacu03g0540 Clacu-Chr3:5606252 0.00E+00 tandem
Clacu03g0540 Clacu-Chr3:5606252 Clacu03g0541 Clacu-Chr3:5628193 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73424 PF07714 PK_Tyr_Ser-Thr 5.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0540 - - - 0.0