Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0541 ATGAAACCTAAAAACAACTACGCCTCTTCATATCCTACTCCACTTCTTCTTCTTCTTTCATTTACTTTCTTCTCTCCAACATTTTGCTTTGGCAAAGATGCAATCACATCAGAAAATTTCATCAAAGACCCTGCTTCTGTTACTTCCAATGCCAGTTCCTTCCAGTTGGGCTTCTTCACACCTCCTAATTCCACCACCCGATATGTCGGAATTTGGTACAACCAAATTTCCTTACAAACCATAGTCTGGGTGGCCAACAAAGACAATCCCCTCAAAGATTCTTCTGGGATTTTCACTATTTCTAAACAGGGACATCTCGTCGTCTTAGATGGAAACCACACCGTCCTCTGGTCTTCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCAACACAATCGCTCGAATTTTAGATTCAGGTAACCTTGTTTTGGAAGATACCGCTTCTGGGAACATCATATGGGTGAGTTTTCAACACCCTTCTAATAAATTCTTGACTTCCATGAAACTGATCACGAACACAAGAACAAAAGAGAAGATGCAGCTTACCTCATGGAGCACCCCAGTTAATCCATCCACTGGAAACTTTTCCTTAGCACTAGAAGTTCTGACAATTCCTGAAGCTGTGATTTGGTCTAATGGTGGAAAGCTTTATTGGCGATCTGGTCCATGGAACGGTCAGTCTTTTATCGGAATACCCGAAATGAACGCTGTTTATCTTTCTGGGTTTAACCTTGTAATTCAAGATCAAGAATACACGTTATCCGTTCCTTATAATTACACTATTCAAGAATTCGCTTATTTGTTTTTAACTTCGAGAGGGAATTTGGTGCAAACGTATTGGAATCCTCAAGTGAGGAATTGGGATGTTATTTGGTTTGCTATAAAAACAGAGTGTGATTTCTATGGAACTTGTGGGGCGTTTGGGATTTGTAATCCAAAGGCATCTCCTAATTGCAGTTGTTTAAAAGGGTTTAAGCCAAAGAATGAAGAGGAATGGAATCAAGGAAATTGGAGTGGTGGGTGTGTGAGAAGGACGCCATTGCAATGCATTAATGGCAGTTCTGAAGAAGATGGATTTCTAACAGTTGAAATGGTTAAATTGCCATATTTTGTAGAGTGGTCCATTTTCGCCGTTACAGAAGATAATTGCAAACAAGAGTGCTTGAGCAATTGTTCGTGTAATGCTTATGCATTTGAAAATGGTATTCGGTGTATGCTATGGAGAAGGGATGACTTAATTGATATACAAAAATTTGAGACTGGTGGGGCTTCTCTTTACCTTCGGTTGCCATATGCAGAATTAGATCATAATAATAATGTAAAAGATAAGAAAGGGATTATTATAGCAATTGTGCTACCAGTGACCTTTATCATCATGATCACCATCACCATATCATTTTGGTTGAAAAGGAAGACTCACAAAAAGAAAAAAACATCTGAAGAAATAGAAAGGACTTTGAAATTGACAAGGGAGGATGATATGATTGAGAATGGTATCAAACTTGAAGATCTACCTCTTTATGACTTTGAGCAGCTTGTAATTGCAACAAACAATTTTGATATAAATAACAAACTTGGGCAAGGTGGGTTTGGTCCTGTATATAAGGGAAAATTGTTAAATGGACAAGAAATAGCAGTAAAAAGGCTTTCAAGAGCCTCCAATCAAGGGCATGAAGAATTTATAAATGAAGTGAGAGTGATTTCTAAACTACAACATAGAAATCTTGTAAGGCTCTTTGGTTGTTGCATGGAAGGAGAAGAGAAAATGTTGATATATGAGTACATGCCTCGCCTAAGTTTGGATGCTTTAATCTTTGGCTCTTCCCAACCAGAACTTTTGGACTGGAGGCAGAGATTTAACATTATTGATGGAATTGCTCGAGGTCTTCTTTATCTTCATAGAGACTCAAGATTGAAAATCATTCATAGAGATCTCAAAGCAAGTAATATTTTGTTAGACCAAGATTTGAACCCTAAAATTTCTGACTTTGGCATGGCAAGGATTTTTTGTGGCAATGAAGTCCAAGCGAACACTTTAAGAGTTGTCGGAACTTATGGGTATATGTCTCCTGAATATGCAATGCAAGGTCGATTTTCAGAGAAATCAGGTGTATTTAGTTTTGGCGTTCTGTTGCTTGAAATTATCAGTGGGAGACGAAATACAGAATTTTACTACCATGAACAAGCTATAAGCTTATTGGGATTTGTATGGAAGTTGTGGATGGAAGACAATCTTATTCCTACGATCGAACCAAGAATATATGAATTGTGCTATCAACTAGAGATTTTTAGATGCATTCAAGTGGGGCTCTTATGCGTTCAAGAATTTGCAAATGATAGGCCAAATGTTTCCACTATTATTTCAATGCTCAATAGTGAAATTGTAGATCTTCCTTCTCCAAAGGAACCTGGAGTGGAAATGGTTAAAGTAGCGTATTTTGTAGAGTGGTCTACTTTATCTTTTACTTCAAGTGATTGCAAACAAGAGTGTTTGAACAATTGTTCTTGTAATGCTTATGCTTATGAAGATGGAATTCGGTGTATGCTTTGGAGAAGGGATGAGTTAATTGATCTTCAAAAGTTTGAGAGTGGTGGAGCTTCTCTTTACCTTCATCAGAAAAAGTCAACTTTGATGTCAAACGAAAAGGAGAAAACGATATTGAAACTGACAAGGGAGGATGATGTGATAATTGAGGATGGCATCACACTTGAAGAGCTACCTCTTTATGATTTTGAGAAGCTTGTAATTGCAACCAACAATTTTGATATAGATAACAAACTTGGGCAAGGTGGCTTTGGTCCAGTGTACAAGGTGGATGCAATTTTTCCTTATGAAGAAAGGAACGATTAA 2856 37.54 MKPKNNYASSYPTPLLLLLSFTFFSPTFCFGKDAITSENFIKDPASVTSNASSFQLGFFTPPNSTTRYVGIWYNQISLQTIVWVANKDNPLKDSSGIFTISKQGHLVVLDGNHTVLWSSNVSSSSSSSSSTNTIARILDSGNLVLEDTASGNIIWVSFQHPSNKFLTSMKLITNTRTKEKMQLTSWSTPVNPSTGNFSLALEVLTIPEAVIWSNGGKLYWRSGPWNGQSFIGIPEMNAVYLSGFNLVIQDQEYTLSVPYNYTIQEFAYLFLTSRGNLVQTYWNPQVRNWDVIWFAIKTECDFYGTCGAFGICNPKASPNCSCLKGFKPKNEEEWNQGNWSGGCVRRTPLQCINGSSEEDGFLTVEMVKLPYFVEWSIFAVTEDNCKQECLSNCSCNAYAFENGIRCMLWRRDDLIDIQKFETGGASLYLRLPYAELDHNNNVKDKKGIIIAIVLPVTFIIMITITISFWLKRKTHKKKKTSEEIERTLKLTREDDMIENGIKLEDLPLYDFEQLVIATNNFDINNKLGQGGFGPVYKGKLLNGQEIAVKRLSRASNQGHEEFINEVRVISKLQHRNLVRLFGCCMEGEEKMLIYEYMPRLSLDALIFGSSQPELLDWRQRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDQDLNPKISDFGMARIFCGNEVQANTLRVVGTYGYMSPEYAMQGRFSEKSGVFSFGVLLLEIISGRRNTEFYYHEQAISLLGFVWKLWMEDNLIPTIEPRIYELCYQLEIFRCIQVGLLCVQEFANDRPNVSTIISMLNSEIVDLPSPKEPGVEMVKVAYFVEWSTLSFTSSDCKQECLNNCSCNAYAYEDGIRCMLWRRDELIDLQKFESGGASLYLHQKKSTLMSNEKEKTILKLTREDDVIIEDGITLEELPLYDFEKLVIATNNFDIDNKLGQGGFGPVYKVDAIFPYEERND 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5628193 5637428 + ClG42_03g0054100.10 Clacu03g0541 245106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0541 951 SMART ntp_6 356 431 IPR003609 -
Clacu03g0541 951 SMART ntp_6 804 874 IPR003609 -
Clacu03g0541 951 Pfam Protein tyrosine and serine/threonine kinase 523 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0541 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0541 951 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 226 IPR036426 -
Clacu03g0541 951 SMART serkin_6 521 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0541 951 ProSiteProfiles Protein kinase domain profile. 521 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0541 951 Pfam S-locus glycoprotein domain 220 330 IPR000858 GO:0048544(InterPro)
Clacu03g0541 951 Gene3D Phosphorylase Kinase; domain 1 480 596 - -
Clacu03g0541 951 SMART blect_4 38 161 IPR001480 -
Clacu03g0541 951 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 26 805 - -
Clacu03g0541 951 ProSiteProfiles PAN/Apple domain profile. 351 432 IPR003609 -
Clacu03g0541 951 CDD STKc_IRAK 527 793 - -
Clacu03g0541 951 CDD PAN_AP_plant 347 432 - -
Clacu03g0541 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 158 - -
Clacu03g0541 951 Gene3D Transferase(Phosphotransferase) domain 1 597 799 - -
Clacu03g0541 951 Pfam PAN-like domain 810 855 IPR003609 -
Clacu03g0541 951 Pfam PAN-like domain 351 416 IPR003609 -
Clacu03g0541 951 Pfam D-mannose binding lectin 80 186 IPR001480 -
Clacu03g0541 951 Gene3D - 30 159 IPR036426 -
Clacu03g0541 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Clacu03g0541 951 SUPERFAMILY Protein kinase-like (PK-like) 908 941 IPR011009 -
Clacu03g0541 951 CDD PAN_AP_plant 807 872 - -
Clacu03g0541 951 SUPERFAMILY Protein kinase-like (PK-like) 504 792 IPR011009 -
Clacu03g0541 951 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 485 596 - -
Clacu03g0541 951 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Clacu03g0541 951 CDD B_lectin 39 161 IPR001480 -
Clacu03g0541 951 Gene3D Phosphorylase Kinase; domain 1 895 944 - -
Clacu03g0541 951 ProSiteProfiles PAN/Apple domain profile. 801 875 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0539 Clacu-Chr3:5598385 Clacu03g0541 Clacu-Chr3:5628193 0.00E+00 dispersed
Clacu03g0541 Clacu-Chr3:5628193 Clacu10g0613 Clacu-Chr10:8300398 9.90E-179 dispersed
Clacu03g0540 Clacu-Chr3:5606252 Clacu03g0541 Clacu-Chr3:5628193 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73425 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0541 - - - 0.0