Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0554 ATGCCAACGCACGCTTTCTTTAGCAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATATGGAGGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATATATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGCCGCATATGA 1755 43.02 MPTHAFFSRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANMEEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNIYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5724574 5729641 - ClG42_03g0055400.10 Clacu03g0554 245119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0554 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Clacu03g0554 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Clacu03g0554 584 PANTHER NADH DEHYDROGENASE 54 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Clacu03g0554 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Clacu03g0554 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Clacu03g0554 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Clacu03g0554 584 Gene3D - 426 583 - -
Clacu03g0554 584 Gene3D - 49 414 - -
Clacu03g0554 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Clacu03g0554 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Clacu03g0554 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Clacu03g0554 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Clacu03g0554 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Clacu03g0554 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Clacu03g0554 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Clacu03g0554 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1766 Clacu-Chr2:31210503 Clacu03g0554 Clacu-Chr3:5724574 3.40E-262 dispersed
Clacu02g2001 Clacu-Chr2:33458305 Clacu03g0554 Clacu-Chr3:5724574 1.80E-70 dispersed
Clacu03g0554 Clacu-Chr3:5724574 Clacu05g2383 Clacu-Chr5:32173014 1.20E-06 dispersed
Clacu01g2344 Clacu-Chr1:34203347 Clacu03g0554 Clacu-Chr3:5724574 2.90E-68 wgd
Clacu02g0138 Clacu-Chr2:1415916 Clacu03g0554 Clacu-Chr3:5724574 9.00E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0554 K03885 - csv:101204145 1137.09