Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0595 ATGTTGATGAAAAAGAGAGGGGAAAGTGGGGCTTTGGCCAACCGAGTCGGTGAGAACACGCAAAGAGCTACCAGACGACCTGGCGATGGATTTTTACTTACTGGTCGAATGGGTATTGATTTTCGTTCTGCAGGAGAAGTTTACAGAATTACGGCCCCAAGTATGAGTTGCATCTGCTTCGGTTCCTCTACTGTGGAGAAGAAACGAATCTCTACACGTGCTGATAAGGAATTGGACATTGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGAACGATTTCCATTCAAACAATAGAATTGGACGGGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGAGTACAAGTTGCAATAAAGAAGCTCTCCATAGAGTCTAAGCAAGGTGCTCACGAATTTTTGACAGAGATCAAAACCATTTCAAATGTTAGGCATCGAAACCTTGTCGAGTTGATTGGATGCTGTTCTCAAAAAGCTAACCGGATCTTGGTATATGAATATCTGGAGAATAATAGTCTCGACCATGCTTTGTTAGATCCTAAGAAAACAAGCGTGAACCTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCGAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATGGGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATCACTCACATTAGCACAAGAATTGCAGGAACAACCGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAGCTAACTCCAAAGGCTGATGTGTATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTCTGGGAGAGAAATATCAATACTCTTGCTGGAAAGGGTGTGGGAGCTATATGAAGAAGGAAAACTCTTAGAAATAGTTGATCCTAGACTAGAAGATTATCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCGGCTGCAAATCGGCGGCCAGCAATGAGCCAAGTCGTTGACATGCTTACAAAGAATATCAAGCTTAACGAGAAGCTACTTACCGCCCCGGGGTTCTATGGAGGCCTGGGGCTTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCGAACACTTCCACTAGCAACGAGATGAGCTCCGCCGTCATCTCCATAACTCAAATCACCCCCAGATGA 1278 43.74 MLMKKRGESGALANRVGENTQRATRRPGDGFLLTGRMGIDFRSAGEVYRITAPSMSCICFGSSTVEKKRISTRADKELDIDLLENVKQISFNELRSASNDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAHEFLTEIKTISNVRHRNLVELIGCCSQKANRILVYEYLENNSLDHALLDPKKTSVNLDWGKRSSICIGTARGLQFLHEEAVPRIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTPKADVYSFGVLILEIVSGRRSSTVSGREISILLLERVWELYEEGKLLEIVDPRLEDYPQEEVLRYMKVALFCTQAAANRRPAMSQVVDMLTKNIKLNEKLLTAPGFYGGLGLSDIPSVSKKTSNTSTSNEMSSAVISITQITPR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6148290 6159251 - ClG42_03g0059500.10 Clacu03g0595 245160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0595 425 MobiDBLite consensus disorder prediction 1 29 - -
Clacu03g0595 425 Gene3D Phosphorylase Kinase; domain 1 68 176 - -
Clacu03g0595 425 Pfam Protein tyrosine and serine/threonine kinase 103 371 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0595 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0595 425 CDD STKc_IRAK 107 373 - -
Clacu03g0595 425 Gene3D Transferase(Phosphotransferase) domain 1 177 383 - -
Clacu03g0595 425 MobiDBLite consensus disorder prediction 399 425 - -
Clacu03g0595 425 FunFam cold-responsive protein kinase 1 72 176 - -
Clacu03g0595 425 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 68 410 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu03g0595 425 SMART serkin_6 101 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0595 425 ProSiteProfiles Protein kinase domain profile. 101 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0595 425 FunFam Putative LRR receptor-like serine/threonine-protein kinase 177 383 - -
Clacu03g0595 425 SUPERFAMILY Protein kinase-like (PK-like) 83 371 IPR011009 -
Clacu03g0595 425 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0595 Clacu-Chr3:6148290 Clacu10g2164 Clacu-Chr10:34798910 1.40E-113 dispersed
Clacu03g0595 Clacu-Chr3:6148290 Clacu07g1066 Clacu-Chr7:25214318 1.20E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73426 PF00069 Pkinase 5.80E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0595 - - - 0.0