Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0611 ATGGCCGTACTCAAACTCCCATTTCTCCTCCTCTCTTTCCCCCTTCTTCTTTTCTCCTCCATTTCCGCCGTCGATTTTCTCTTCAATGGCTTCAATTCCACCGCCGTCTCCCTCTACGGCAACGCCACCATCGAATCCCCTTTCATCGCTCTCACCAACCAAACCAATTTCTCCATCGGCCGCGCTCTGTACCCTTCCAAAATCCCCACTAAGCCTCCTAATTCCTCTTCCCCCTACCCTTTCTCCGCTTCTTTCATCTTCGCCATGGCCCCTTACAGAGATACCCTTCCTGGGCATGGCTTGGTTTTCATTTTCGTTCCCACCACCGGAATCGAGGGAACTGCCTCTGCTCAGAATTTGGGGTTTCTCAACTTCACGCTTAATGGGAACCCCAATAACCATGTCTTCGGAATTGAGTTTGATGTGTTTGCTAATGAGGAATTCAACGACCCCAACGATAATCATGTCGGAATCAACTTGAATTCCTTGACGTCTTTCGTCACCGGAGAAGCTGGGTTTTGGTCTGACGGTGGTGGCGCGGATTCTTTCAACAGGTTCAGGCTTAATAGCGGCGAAAATTATCAAGTCTGGGTTGACTATTCCGACTTTCAGATGAATGTTACGATGGCTCCGGTGGGGATGAAGAAGCCACGGCGGCCGTTGATTAATACCTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATGTGGGGTTCACGAGTTCAACAGGGCAGTTGGTTCAAGGCCATAACATTTTAGCTTGGAGTTTCAGTAACTCTAATTTTTCATTGAGTGAGAGTTTGATTACAACTGGATTGCCCTCCTTCGTCCTCCCGAAAGACCCAATTACCAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTCGTCGTTTGTTTCATCGCGATGATTTTGGGGATTTTGATCGCCGACCACCGGAGGAAAGCGAGATTGAGAGCCGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATGACATATCAAGAAATCGAATCGGCAACGAAAGGTTTTGCAGAAGAAAATGTGATCGGAATCGGAGGAAATGGGAAAGTTCATAAAGGGATTTTGGCCGGTGGAGGTTCTGAAGTTGCAGTGAAACGAATTTCTCACGATAACGACGGGATGCGTGAATTCTTAGCTGAAATCTCAAGCATAGGAAGATTAAAGCACAGAAATCTAGTAAGTTTGAGGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTGCTTGTTTACGATTACATGGAAAATGGAAGCTTAGATAAATGGGTTTTTGATTGCGAGGAAAGAAACATGTTGAGTTGCGAGGATCGAATCCGAGTATTGAAAAACGTAGCCTCAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCATAGGGATATAAAAGCTAGCAACGTGTTGTTAGATAAGGATATGAATGGAAGGCTAGGAGATTTCGGGCTAGCTCGAGTCCATGGTCACGGTCAAGTGGCGAGCACCACTCGAGTCGTTGGCACCATGGGTTATATTGCCCCCGAGTTGATTCGAACTGGACGAGCCTCTGCTCAATCCGACGTATTTGGCTTTGGGGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCGTTGGTGGATTGGGTTCGGCGGTTGGTGGTTGAAGGGGAGCTCACAGCAGCGCTCGATGAGAGGCTGAGGAAGAAGGGTGGGTGGAACGAGGAGGAAGTTGAGAGAGTAATGCATTTGGGATTGTTGTGTGCGCATCCTAACCCGAACACTCGGCCAACGATGAGGCAAATTGTGAAGGTTTTGGAAGGGAAGATTGAGTTGGATGAGAGTGAGAGTGAGAGTATGAATGCTTATTTGCTCCAAAGATTGAAGTCACAAGGAATTTGGTCTGATTCTGCTGTTGGTTTTGGGAATAGATTGCATCCCACATTTGAGGATTTTCTTCAGTCTTCTTCAACTTCCATATCTTGGTCTAGTTCCAATGTCCATGGCAGGTGA 2052 47.03 MAVLKLPFLLLSFPLLLFSSISAVDFLFNGFNSTAVSLYGNATIESPFIALTNQTNFSIGRALYPSKIPTKPPNSSSPYPFSASFIFAMAPYRDTLPGHGLVFIFVPTTGIEGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFANEEFNDPNDNHVGINLNSLTSFVTGEAGFWSDGGGADSFNRFRLNSGENYQVWVDYSDFQMNVTMAPVGMKKPRRPLINTSLNLSGIFMDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITTGLPSFVLPKDPITKSKWFIAGVTAGGFLVVCFIAMILGILIADHRRKARLRAEMEDWELEYWPHRMTYQEIESATKGFAEENVIGIGGNGKVHKGILAGGGSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLRGWCKKEKGNFLLVYDYMENGSLDKWVFDCEERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASAQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLVVEGELTAALDERLRKKGGWNEEEVERVMHLGLLCAHPNPNTRPTMRQIVKVLEGKIELDESESESMNAYLLQRLKSQGIWSDSAVGFGNRLHPTFEDFLQSSSTSISWSSSNVHGR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6319956 6322007 + ClG42_03g0061100.10 Clacu03g0611 245176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0611 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0611 683 PANTHER - 36 625 IPR050528 GO:0005886(PANTHER)
Clacu03g0611 683 CDD STKc_IRAK 356 621 - -
Clacu03g0611 683 CDD lectin_legume_LecRK_Arcelin_ConA 24 256 IPR001220 GO:0030246(InterPro)
Clacu03g0611 683 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Clacu03g0611 683 SMART serkin_6 350 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0611 683 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246(InterPro)
Clacu03g0611 683 Gene3D Phosphorylase Kinase; domain 1 313 426 - -
Clacu03g0611 683 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0611 683 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 312 426 - -
Clacu03g0611 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 266 IPR013320 -
Clacu03g0611 683 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Clacu03g0611 683 FunFam L-type lectin-domain containing receptor kinase S.4 427 632 - -
Clacu03g0611 683 Gene3D - 22 268 - -
Clacu03g0611 683 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Clacu03g0611 683 ProSiteProfiles Protein kinase domain profile. 350 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0611 683 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0611 Clacu-Chr3:6319956 Clacu06g1839 Clacu-Chr6:28926513 4.50E-141 dispersed
Clacu03g0611 Clacu-Chr3:6319956 Clacu07g0274 Clacu-Chr7:3102491 9.80E-213 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73427 PF00069 Pkinase 1.10E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0611 - - - 0.0