Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0616 ATGCAGGCTTTCACGAACCCAACCTCGCTCTCTCTCTCACAACCAGTCTCCACGTTTCCGTCGTCGAAGGTCTTTCGTGGAGCTTCTGTTCGCAAGTCATTCAGCGTTGCATGCTGTCCTTGGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAGCCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTAGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTCGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTTTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATCCATGGTTTGATGTGCATGGTGAAGAAGACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGGACAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTTTTCCCTCTTGACCTTGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAGTTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACAATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAGATATTAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCACTCAAAGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCACTCTTGCAGAATCCTTAAACAAAGCAAGAGATATGATCTATCCTCCAGTTAGGAAAGCCTCGAAAACAGGTGATATGTTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTGGCCCTTACTGAACAATTAAGGGAGAGACAAGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATCCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGACAGAGAAGAACATATCAGGCAAATAATTCAGGCCCGGAAAGCGGAAAGGGAGGCTAAGAGGAAGAAAATATTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGGCTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCTTCTGGATTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCAGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACTGCTACTGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATTGTGGTCCTCATCCCGAGTTCCTACTCGTACCAGCACGGACCACTGA 3021 43.53 MQAFTNPTSLSLSQPVSTFPSSKVFRGASVRKSFSVACCPWPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSKNIVLFGNLGIESDGLRDHLTTLAESLNKARDMIYPPVRKASKTGDMLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERNQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFSRRRADREEHIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRLLDSGTAAPAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRSLWSSSRVPTRTSTDH 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6427274 6436332 + ClG42_03g0061600.10 Clacu03g0616 245181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0616 1006 FunFam Eukaryotic translation initiation factor 3 subunit A 387 529 - -
Clacu03g0616 1006 Coils Coil 596 635 - -
Clacu03g0616 1006 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 42 981 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Clacu03g0616 1006 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 476 567 IPR000717 -
Clacu03g0616 1006 MobiDBLite consensus disorder prediction 849 1006 - -
Clacu03g0616 1006 Coils Coil 767 787 - -
Clacu03g0616 1006 Coils Coil 638 684 - -
Clacu03g0616 1006 Pfam PCI domain 473 543 IPR000717 -
Clacu03g0616 1006 MobiDBLite consensus disorder prediction 988 1006 - -
Clacu03g0616 1006 Coils Coil 834 893 - -
Clacu03g0616 1006 Gene3D UVR domain 252 303 - -
Clacu03g0616 1006 Coils Coil 128 155 - -
Clacu03g0616 1006 FunFam Eukaryotic translation initiation factor 3 subunit A 252 303 - -
Clacu03g0616 1006 ProSiteProfiles PCI domain profile. 351 548 IPR000717 -
Clacu03g0616 1006 Coils Coil 704 734 - -
Clacu03g0616 1006 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 37 981 IPR027512 GO:0005852(InterPro)
Clacu03g0616 1006 Pfam eIF3a, PCI domain, TPR-like region 43 442 IPR054711 -
Clacu03g0616 1006 Coils Coil 809 829 - -
Clacu03g0616 1006 Gene3D - 304 378 - -
Clacu03g0616 1006 Gene3D - 398 529 - -
Clacu03g0616 1006 MobiDBLite consensus disorder prediction 849 896 - -
Clacu03g0616 1006 FunFam Eukaryotic translation initiation factor 3 subunit A 303 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0616 Clacu-Chr3:6427274 Clacu03g1791 Clacu-Chr3:31636898 0.00E+00 dispersed
Clacu03g0616 Clacu-Chr3:6427274 Clacu03g0619 Clacu-Chr3:6459154 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0616 K03254 - csv:101215735 1560.81