Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0623 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTATAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCACTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCAACCCCGGTGAGATATCCAAGCTTTCGGTTCAATTGGCTCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTGATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGACTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCGGAAGTTGATCCGGCTTTGGCGAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGTCTTGCCATTCTCTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGACTTATGATAATCGCCAAAGCAAGGGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTCGTAGCGGTAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTAAGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAATTGGCAGCCTTAATTTCATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCAAGCAAACACCAGGCGGTCGCCCTGATGTCGACATCCGACCAATCAATCTTCTATCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACAGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGCACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGGTACAAGGCTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGTCCTGGTTCTTCCACAGCCAAAAGAGTGAAATGGAAGGGTTTGAAGAACATTAGCATTAAAACTGCTAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.31 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVVLVGVVVGVVFGTINASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLNPGEISKLSVQLALDELSRVANYIFDHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMTYDNRQSKGDWVRPILRKLAQTDIRKQANIVVAVDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVKKNKWNVVMVGDGMNATTVIGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGLKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6520741 6522699 - ClG42_03g0062300.10 Clacu03g0623 245188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0623 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Clacu03g0623 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Clacu03g0623 567 FunFam Pectinesterase 255 567 - -
Clacu03g0623 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Clacu03g0623 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Clacu03g0623 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Clacu03g0623 567 Gene3D - 256 567 IPR012334 -
Clacu03g0623 567 NCBIfam pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857(InterPro)
Clacu03g0623 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Clacu03g0623 567 FunFam Pectinesterase 66 220 - -
Clacu03g0623 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu03g0623 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Clacu03g0623 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu03g0623 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0623 Clacu-Chr3:6520741 Clacu07g1435 Clacu-Chr7:29062007 3.20E-124 dispersed
Clacu03g0623 Clacu-Chr3:6520741 Clacu05g0727 Clacu-Chr5:6110359 4.90E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0623 - - - 0.0