Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0644 ATGTTGGAACACCTCGCCCGAGAATCAGACGGGGAGCTTGGTTACGAAGCAGCTGTTAATTCAAATTCCAGTCAAAATTCTATGAGCAGTGAGAGTTGTAGTAGTTTCAGTCGTCTCTCCTTTGATGCTGCCATTGATTTACCTACCTCTCGATCTTCGCCGGAGAGTCTTGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCTATTCGTCGACGGAAATCTAAGCTTACCTTTCGTGATTTTCGACTTCTCCGTCGGATTGGTGCTGGCGACATTGGGACTGTTTATTTATGTCAGCTGAGGAAGCTGAGCGAGGGGTGTTATGAGGAGGAAGATGATGATCCGTGTTTGTATGCGATGAAAGTTGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTGCAGAGGGCGGAAATGGAGAGGAGAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACACTCTACGCTGAGTTTGAGGCTTCTCATTTTTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCACTTCCGCGAGGTTTTATGCAGCTGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACAGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTATCGGATTTCGATTTATCTCTCTGCTCCGACGCCACCCCTGCCGTTGAATCACCCAACTCCTCCCCTACCACGGCGTTTCCCGACGCAACGGCCTACCCCAGAACCAACGCTGCCGTTTCCGCCGCCTCCACAACTCCTTTTTCCTGCCTCTACAACCGTCTTTTCCGGTCGCGCAAGGTCCAAACTCTGACCCCCAACTGGCTCTTTGTCGCAGAGCCCGTTTCCGCTCGGTCCTGCTCTTTCGTCGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCCCACGGTAACGCCGTTGACTGGTGGGCCTTTGGAATATTTCTCTACGAGTTGATCTACGGCCGCACGCCGTTTGCGGCTTCGTCCAACGAGACGACGCTAAGGAACATTATAAAGAAGCCGTTGACGTTTCCGACTGCGGTGCCGTCTGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGATTGCTTAACAAGGATCCGACCCGGAGACTTGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCGTTCTTCAAGGGGCTCAACTTCGCCTTAATTCGGTCGCTCACTCCGCCGGAAATTCCCGGCGTACGACGGCGGAAGCAGACTCCCGTTCCGGCGGCCAAGAGCAAGGACAAGCCGGGTCAGTCAGCCGGGTTCGATTACTTCTGA 1398 52.5 MLEHLARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLSEGCYEEEDDDPCLYAMKVVDKEALELKKKVQRAEMERRILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPTTAFPDATAYPRTNAAVSAASTTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEIPGVRRRKQTPVPAAKSKDKPGQSAGFDYF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6962104 6964096 + ClG42_03g0064400.10 Clacu03g0644 245209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0644 465 MobiDBLite consensus disorder prediction 436 465 - -
Clacu03g0644 465 FunFam serine/threonine-protein kinase D6PK-like 312 438 - -
Clacu03g0644 465 SMART serkin_6 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0644 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0644 465 Pfam Protein kinase domain 85 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0644 465 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0644 465 SUPERFAMILY Protein kinase-like (PK-like) 63 436 IPR011009 -
Clacu03g0644 465 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Clacu03g0644 465 CDD STKc_phototropin_like 82 443 - -
Clacu03g0644 465 PANTHER FLIPPASE KINASE 1-RELATED 30 443 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu03g0644 465 ProSiteProfiles Protein kinase domain profile. 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0644 465 FunFam protein kinase PINOID 175 243 - -
Clacu03g0644 465 Coils Coil 123 150 - -
Clacu03g0644 465 Gene3D Transferase(Phosphotransferase) domain 1 313 438 - -
Clacu03g0644 465 FunFam protein kinase PINOID 2 82 174 - -
Clacu03g0644 465 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0644 Clacu-Chr3:6962104 Clacu11g0425 Clacu-Chr11:3994231 7.60E-108 dispersed
Clacu03g0644 Clacu-Chr3:6962104 Clacu02g2251 Clacu-Chr2:35616986 5.60E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73429 PF00069 Pkinase 1.10E-31 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0644 - - - 0.0