Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0651 ATGAGGCTCTCTGCAGGTGGTTTTAGTCCTCAGGCTCAGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCGAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAATCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGAACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACGGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACACGATAATGAGTGGAAATTTAGACACATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAATCAATTACTCCTTGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCTCTGACCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTCAGGATGCTGTTTGAGACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAACGGCAGCCAAGAGTTTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGTTTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAGTCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCCGTTCTGCAATTCCAGCAGCCCCAAGGTCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAAGCGTTTCTACAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAACAATTGTTCAATAATCAACAACAGCAGCATCAACAGCAACCAAGGCAGGCACAGCCACTCGATCATCAGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCTCAGTCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAGGTTTTTCTGATTCCAACGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCGGCCCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTGTACTGGAGCTGCTCAATATTTTCTACCTCAAGTGGAAATTTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCTTTCCCCGGAAGGGAGTGTCCTATTGATGACCGAGATGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAATCTTCATCCCTTCTCATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGACGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGCGATGGCCCATGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATTTCAGGGATAACCTCTGTCGGGGCTCTTGACTACTGA 2709 47.32 MRLSAGGFSPQAQEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQTQSHHLQPQLQPQQLFNNQQQQHQQQPRQAQPLDHQQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPGFSDSNGNPVTSPTVSPLHSLAGSFVQDDSAQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGAAQYFLPQVEILGTPQSSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGALDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7105734 7111117 + ClG42_03g0065100.10 Clacu03g0651 245216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0651 902 ProSiteProfiles PB1 domain profile. 769 853 IPR053793 -
Clacu03g0651 902 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu03g0651 902 Gene3D - 291 363 - -
Clacu03g0651 902 FunFam Auxin response factor 291 363 - -
Clacu03g0651 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 860 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu03g0651 902 FunFam Auxin response factor 765 858 - -
Clacu03g0651 902 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Clacu03g0651 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Clacu03g0651 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Clacu03g0651 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
Clacu03g0651 902 Pfam AUX/IAA family 763 858 IPR033389 -
Clacu03g0651 902 Gene3D - 767 858 - -
Clacu03g0651 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Clacu03g0651 902 Gene3D - 125 228 IPR015300 -
Clacu03g0651 902 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Clacu03g0651 902 FunFam Auxin response factor 125 229 - -
Clacu03g0651 902 MobiDBLite consensus disorder prediction 483 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0831 Clacu-Chr1:9144969 Clacu03g0651 Clacu-Chr3:7105734 1.70E-260 dispersed
Clacu03g0651 Clacu-Chr3:7105734 Clacu05g2015 Clacu-Chr5:29170340 2.50E-171 dispersed
Clacu11g0281 Clacu-Chr11:2590416 Clacu03g0651 Clacu-Chr3:7105734 1.00E-171 transposed
Clacu01g2567 Clacu-Chr1:35910482 Clacu03g0651 Clacu-Chr3:7105734 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47403 PF02309 AUX_IAA 3.20E-07 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0651 K14486 - csv:101211705 1659.43