Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0658 | ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCTGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGCCGTAAAGGCCATTTATCAGTCGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGGTAA | 1395 | 42.8 | MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSR | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7234287 | 7242393 | - | ClG42_03g0065800.10 | Clacu03g0658 | 245223 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0658 | 464 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu03g0658 | 464 | FunFam | Non-specific serine/threonine protein kinase | 15 | 103 | - | - | |
Clacu03g0658 | 464 | SMART | serkin_6 | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0658 | 464 | CDD | STKc_SnRK3 | 23 | 278 | - | - | |
Clacu03g0658 | 464 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 12 | 434 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu03g0658 | 464 | Pfam | NAF domain | 323 | 383 | IPR004041 | GO:0007165(InterPro) | |
Clacu03g0658 | 464 | CDD | CIPK_C | 327 | 442 | - | - | |
Clacu03g0658 | 464 | FunFam | Non-specific serine/threonine protein kinase | 17 | 321 | - | - | |
Clacu03g0658 | 464 | ProSiteProfiles | Protein kinase domain profile. | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0658 | 464 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Clacu03g0658 | 464 | Gene3D | Kinase associated domain 1, KA1 | 320 | 446 | - | - | |
Clacu03g0658 | 464 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 289 | IPR011009 | - | |
Clacu03g0658 | 464 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 286 | - | - | |
Clacu03g0658 | 464 | Pfam | Protein kinase domain | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0658 | 464 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
Clacu03g0658 | 464 | ProSiteProfiles | NAF domain profile. | 321 | 345 | IPR018451 | GO:0007165(InterPro) | |
Clacu03g0658 | 464 | FunFam | Non-specific serine/threonine protein kinase | 320 | 446 | - | - | |
Clacu03g0658 | 464 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2460 | Clacu-Chr2:37542285 | Clacu03g0658 | Clacu-Chr3:7234287 | 4.60E-182 | dispersed | |
Clacu03g0658 | Clacu-Chr3:7234287 | Clacu05g0050 | Clacu-Chr5:755297 | 1.20E-174 | dispersed | |
Clacu10g2117 | Clacu-Chr10:34396505 | Clacu03g0658 | Clacu-Chr3:7234287 | 1.60E-42 | transposed | |
Clacu01g2559 | Clacu-Chr1:35853039 | Clacu03g0658 | Clacu-Chr3:7234287 | 7.50E-215 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73430 | PF00069 | Pkinase | 7.60E-75 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0658 | - | - | - | 0.0 |