Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0658 ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCTGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGCCGTAAAGGCCATTTATCAGTCGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGGTAA 1395 42.8 MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7234287 7242393 - ClG42_03g0065800.10 Clacu03g0658 245223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0658 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0658 464 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Clacu03g0658 464 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0658 464 CDD STKc_SnRK3 23 278 - -
Clacu03g0658 464 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu03g0658 464 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Clacu03g0658 464 CDD CIPK_C 327 442 - -
Clacu03g0658 464 FunFam Non-specific serine/threonine protein kinase 17 321 - -
Clacu03g0658 464 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0658 464 MobiDBLite consensus disorder prediction 1 23 - -
Clacu03g0658 464 Gene3D Kinase associated domain 1, KA1 320 446 - -
Clacu03g0658 464 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Clacu03g0658 464 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Clacu03g0658 464 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0658 464 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Clacu03g0658 464 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Clacu03g0658 464 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Clacu03g0658 464 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2460 Clacu-Chr2:37542285 Clacu03g0658 Clacu-Chr3:7234287 4.60E-182 dispersed
Clacu03g0658 Clacu-Chr3:7234287 Clacu05g0050 Clacu-Chr5:755297 1.20E-174 dispersed
Clacu10g2117 Clacu-Chr10:34396505 Clacu03g0658 Clacu-Chr3:7234287 1.60E-42 transposed
Clacu01g2559 Clacu-Chr1:35853039 Clacu03g0658 Clacu-Chr3:7234287 7.50E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73430 PF00069 Pkinase 7.60E-75 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0658 - - - 0.0