Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0698 ATGGCGGCCTCAACAATGGCTCTGTCCTCACCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCTCCCCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGTTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCATCGGAGATTCACCGGTGACTACGGTTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTGGGCCATGCTCGGAGCGTTCGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAGCGGCGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCACGGGGGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA 723 56.85 MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGPFSGEPPSYLIGDSPVTTVGILPDFPQTLRPSPRTVSLKSSTLGGPCSERSAACSRSFFPAAAEPELDPRPKHSSHLGLSGGSHGGRRGIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7760660 7762871 + ClG42_03g0069800.10 Clacu03g0698 245263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0698 240 SUPERFAMILY Chlorophyll a-b binding protein 153 237 - -
Clacu03g0698 240 Gene3D Chlorophyll a/b binding protein domain 140 237 - -
Clacu03g0698 240 Pfam Chlorophyll A-B binding protein 159 207 IPR022796 -
Clacu03g0698 240 MobiDBLite consensus disorder prediction 1 45 - -
Clacu03g0698 240 MobiDBLite consensus disorder prediction 123 144 - -
Clacu03g0698 240 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 74 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0698 Clacu-Chr3:7760660 Clacu10g1178 Clacu-Chr10:24465764 3.30E-62 dispersed
Clacu03g0698 Clacu-Chr3:7760660 Clacu01g2513 Clacu-Chr1:35489876 9.80E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0698 K08912 - rcu:8289767 281.567