Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0708 ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGGTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCAGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCCATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATCGATCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACCGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACTCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGACTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACTAATCTCGTCGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACAAGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCACAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAGTTAGAACCACAAAGCTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATTATGGGGAATATTTGGTGTGATAATGGTGAGCTATTAAAGAAAGTTGAAAATTATTCTAAAGAGGATGATGAAAATTATGTGGGAAGTAATAATAATAATTTAGATGAACATAGAATTGAGTTTGATGAAGAGGTTGAAGGGGGTGAAAAGGAAATTATTAAATTTTCTCATAACAACAAATTACAAGGAAGAAATAATGGAGGTCAACCTTCATTAGAAAATTTCCCAACAGTTAGCTCTAATTACTTGAATAATGTCTCTAGACAAATCAAGAAAAGGGTTACTGTATATATGCAGCATCCTCAAGATAGAAGCAAGGTTAAAAGTCAATATGGGAAGTTGATGCTTCTCCCCAATTCCATCGAAGAGCTTTGCAAAATTGCTGGTGAAAAGTTTGGAGGGCAAATGCCAACAAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA 2061 38.96 MRCSYCTKHFFQRFFTDEFQINGGGGSGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCQKPQPFTVRTTKLSQILRLKRTSLLYILQSNTEDGNIIMNNFFMKMKEYERIMGNIWCDNGELLKKVENYSKEDDENYVGSNNNNLDEHRIEFDEEVEGGEKEIIKFSHNNKLQGRNNGGQPSLENFPTVSSNYLNNVSRQIKKRVTVYMQHPQDRSKVKSQYGKLMLLPNSIEELCKIAGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7857543 7864432 - ClG42_03g0070800.10 Clacu03g0708 245273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0708 686 Gene3D Jelly Rolls 351 516 IPR014710 -
Clacu03g0708 686 Pfam Ion transport protein 66 313 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 79 86 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu03g0708 686 ProSiteProfiles KHA domain profile. 606 686 IPR021789 -
Clacu03g0708 686 ProSiteProfiles cAMP/cGMP binding motif profile. 384 506 IPR000595 -
Clacu03g0708 686 SUPERFAMILY Voltage-gated potassium channels 61 307 - -
Clacu03g0708 686 CDD CAP_ED 384 500 IPR000595 -
Clacu03g0708 686 FunFam Potassium channel KAT3 68 308 - -
Clacu03g0708 686 Gene3D - 67 307 - -
Clacu03g0708 686 SMART cnmp_10 384 504 IPR000595 -
Clacu03g0708 686 Pfam Cyclic nucleotide-binding domain 403 492 IPR000595 -
Clacu03g0708 686 FunFam Potassium channel KAT2 372 511 - -
Clacu03g0708 686 SUPERFAMILY cAMP-binding domain-like 311 503 IPR018490 -
Clacu03g0708 686 Pfam KHA, dimerisation domain of potassium ion channel 605 675 IPR021789 -
Clacu03g0708 686 PANTHER POTASSIUM CHANNEL AKT1 17 540 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0708 Clacu-Chr3:7857543 Clacu06g1155 Clacu-Chr6:21956845 5.00E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0708 K21867 - csv:101215858 1179.47