Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0725 ATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCGGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGGTTTATATTCCACGAGGATGCAAAGAAATTCGACAGACATGCAAAGAACAAATATTCACGGACAAAACCTCCGAAGAGCTATCGACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATTAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAAGCACATAGATTACTGTATGCATAGAATAAATCTACTTCGGCACTATGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTGATTAGACACTTGAGGTACAGCACAGTTTCAGTTCCTCATCTGTATGAAGAATCATTCAAGAAAGCGATATTGACTTTTCAGCATCAACGGGTTTACGACCCTATCACTGAAGAAATCGTACATCTATCCCAAATATCCAGCCATATAGGAGATGACTTGGATTTCTTGGGCCCATATCCTTTTCTTTGGAGCTCATTCCAATTTTCTGAGCAGAATATCAACACCGGAGTTGCGCATGAAAGACCTTACATATTAAAAGAATTTAACCCTGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTTAGGGATGACACCTCAATTGGTGCCAAGGAGCAAGTTGGTCCCGAAGATAGTTGCTCGCCAGCTTCTACCAATCACGGTGAAAATGTAGAGGGCTGTCCATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGATTCTTGCAATCAGAGTAAGGATATGGTCAGCAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAGAGGGTCATTGTAAGGAGTTCTTACTTCACGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTCCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGATGAAACAGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTTAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACGATGA 2760 42.5 MVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRHAKNKYSRTKPPKSYRPCRAMGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNALPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTVSVPHLYEESFKKAILTFQHQRVYDPITEEIVHLSQISSHIGDDLDFLGPYPFLWSSFQFSEQNINTGVAHERPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKQSANQPSFRDDTSIGAKEQVGPEDSCSPASTNHGENVEGCPSTYPVRNDNADGFPLSDSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFTHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSPCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHDETVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRR 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8060637 8069997 + ClG42_03g0072500.10 Clacu03g0725 245290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0725 919 MobiDBLite consensus disorder prediction 747 768 - -
Clacu03g0725 919 SMART xpgn3 248 346 IPR006085 GO:0004518(InterPro)
Clacu03g0725 919 FunFam exonuclease 1 456 528 - -
Clacu03g0725 919 FunFam Exonuclease 1, putative 248 454 - -
Clacu03g0725 919 CDD PIN_EXO1 248 449 IPR044752 GO:0046872(InterPro)
Clacu03g0725 919 SUPERFAMILY PIN domain-like 249 473 IPR029060 -
Clacu03g0725 919 MobiDBLite consensus disorder prediction 747 764 - -
Clacu03g0725 919 ProSitePatterns XPG protein signature 1. 318 332 IPR019974 GO:0016788(InterPro)
Clacu03g0725 919 MobiDBLite consensus disorder prediction 648 662 - -
Clacu03g0725 919 Pfam XPG I-region 388 473 IPR006086 GO:0004518(InterPro)
Clacu03g0725 919 Pfam Eukaryotic initiation factor 4E 61 213 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu03g0725 919 Gene3D - 457 528 - -
Clacu03g0725 919 SMART xpgineu 385 455 IPR006086 GO:0004518(InterPro)
Clacu03g0725 919 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Clacu03g0725 919 MobiDBLite consensus disorder prediction 622 670 - -
Clacu03g0725 919 MobiDBLite consensus disorder prediction 1 36 - -
Clacu03g0725 919 MobiDBLite consensus disorder prediction 884 900 - -
Clacu03g0725 919 Gene3D RNA Cap, Translation Initiation Factor Eif4e 52 235 IPR023398 -
Clacu03g0725 919 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 405 425 IPR006084 -
Clacu03g0725 919 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 271 285 IPR006084 -
Clacu03g0725 919 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 384 401 IPR006084 -
Clacu03g0725 919 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 320 339 IPR006084 -
Clacu03g0725 919 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 463 478 IPR006084 -
Clacu03g0725 919 MobiDBLite consensus disorder prediction 9 24 - -
Clacu03g0725 919 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 248 870 IPR006084 GO:0017108(PANTHER)
Clacu03g0725 919 Gene3D - 248 454 - -
Clacu03g0725 919 MobiDBLite consensus disorder prediction 884 919 - -
Clacu03g0725 919 Pfam XPG N-terminal domain 248 345 IPR006085 GO:0004518(InterPro)
Clacu03g0725 919 CDD H3TH_EXO1 461 532 IPR037315 GO:0003677(InterPro)|GO:0035312(InterPro)
Clacu03g0725 919 SUPERFAMILY eIF4e-like 56 231 IPR023398 -
Clacu03g0725 919 SMART HhH_4 460 493 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Clacu03g0725 919 FunFam Eukaryotic translation initiation factor 4E 51 235 - -
Clacu03g0725 919 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 459 574 IPR036279 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0725 Clacu-Chr3:8060637 Clacu04g1127 Clacu-Chr4:25543643 4.30E-70 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0725 K10746 - csv:101214177 1189.87