Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0731 ATGAGTTTTGATAATGAAGAGTCAACAGGAGCAGAAAGAAGATCGTCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAAAGAATTGAAAATACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGGTTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCTACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACGATTTCGAGGTACAAAAAAGCATGTTCGGATCCCTCCAGCACCGTATCGGTTTCGGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTAAACAGGCATTTGTTGGGAGAATCGATTAGTTCGTTGTCCGTTAAAGATCTGAAAAGCCTGGAGATCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGGAAATTGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACACAAGTGCAAATAATGCAATAGCAGGAAGAGGGAGAGGAGAGCAAGGATCTGTGGCTCCAAATTTAGAGGTTAATCATAATAATCAATATGACCCAGCAAATTACTTTCCCCATCATAATCATCATATCTCTCTGCAACTTGTGTGA 741 40.49 MSFDNEESTGAERRSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSSTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELHNNNQLIRAKIAETERSQQNTSANNAIAGRGRGEQGSVAPNLEVNHNNQYDPANYFPHHNHHISLQLV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8139602 8146607 - ClG42_03g0073100.10 Clacu03g0731 245296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0731 246 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Clacu03g0731 246 MobiDBLite consensus disorder prediction 192 206 - -
Clacu03g0731 246 Pfam K-box region 102 189 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu03g0731 246 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 Gene3D - 31 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 SUPERFAMILY SRF-like 20 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu03g0731 246 MobiDBLite consensus disorder prediction 192 224 - -
Clacu03g0731 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g0731 246 MobiDBLite consensus disorder prediction 1 25 - -
Clacu03g0731 246 CDD MADS_MEF2_like 20 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu03g0731 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 210 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu03g0731 246 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0731 Clacu-Chr3:8139602 Clacu08g0058 Clacu-Chr8:1344694 3.30E-70 dispersed
Clacu01g2487 Clacu-Chr1:35266813 Clacu03g0731 Clacu-Chr3:8139602 1.10E-79 wgd
Clacu02g1880 Clacu-Chr2:32295873 Clacu03g0731 Clacu-Chr3:8139602 5.90E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47409 PF01486 K-box 1.60E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0731 K09264 - csv:101205366 393.66