Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0733 ATGGAAACGAATAACAGTAACAACGGGGTGAGGTTTTTGTTGGGGAAGCAATCGTCGATGGCGCCGGACCGGAAATCGGAGGAGGTGGCGGAGGCGGAGGCGGAGGCGGGGGAAGACGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTAGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCAAGATCGTCGATTTATTGCTCCACCGTGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCCATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGTACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCCGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTGTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTACACGAAAATAAACCTGCCCCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTCACAGTCAAGGAGGATAAACCTCTAATTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCACCGTTTTCAAACAAAAAAGAAAATGCCATTCTTAAAGAGTATGCAGCCGGAGTACGCCCTCCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGGCAGATAATCACGAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACAATGAGATGTTTTCAGGATCCAGAAGCTAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCACGATCTGCAAGCAGCATATGA 1389 44.71 METNNSNNGVRFLLGKQSSMAPDRKSEEVAEAEAEAGEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSKIVDLLLHRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAAGVRPPFKAPAKCYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQDPEAKIRRDHLSSSRSLSSRSASSI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8172960 8177985 - ClG42_03g0073300.10 Clacu03g0733 245298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0733 462 FunFam Os01g0748600 protein 148 435 - -
Clacu03g0733 462 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515(InterPro)
Clacu03g0733 462 PIRSF ILK 1 437 - -
Clacu03g0733 462 Pfam Ankyrin repeats (3 copies) 49 136 IPR002110 GO:0005515(InterPro)
Clacu03g0733 462 SUPERFAMILY Protein kinase-like (PK-like) 171 418 IPR011009 -
Clacu03g0733 462 SUPERFAMILY Ankyrin repeat 48 137 IPR036770 -
Clacu03g0733 462 ProSiteProfiles Protein kinase domain profile. 127 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0733 462 Gene3D Phosphorylase Kinase; domain 1 161 237 - -
Clacu03g0733 462 Pfam Protein tyrosine and serine/threonine kinase 174 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0733 462 CDD STKc_MAP3K-like 171 415 - -
Clacu03g0733 462 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Clacu03g0733 462 FunFam Integrin-linked protein kinase family 26 153 - -
Clacu03g0733 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 78 416 IPR051681 GO:0004674(PANTHER)
Clacu03g0733 462 MobiDBLite consensus disorder prediction 1 40 - -
Clacu03g0733 462 SMART ANK_2a 44 73 IPR002110 GO:0005515(InterPro)
Clacu03g0733 462 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Clacu03g0733 462 SMART ANK_2a 110 139 IPR002110 GO:0005515(InterPro)
Clacu03g0733 462 Gene3D Transferase(Phosphotransferase) domain 1 238 453 - -
Clacu03g0733 462 FunFam serine/threonine-protein kinase STY46-like 155 238 - -
Clacu03g0733 462 Gene3D - 15 150 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0733 Clacu-Chr3:8172960 Clacu05g1691 Clacu-Chr5:25574193 7.20E-42 dispersed
Clacu05g2600 Clacu-Chr5:33827712 Clacu03g0733 Clacu-Chr3:8172960 4.60E-81 transposed
Clacu09g1433 Clacu-Chr9:20259546 Clacu03g0733 Clacu-Chr3:8172960 3.70E-86 transposed
Clacu01g2485 Clacu-Chr1:35250137 Clacu03g0733 Clacu-Chr3:8172960 7.50E-144 wgd
Clacu02g1878 Clacu-Chr2:32268201 Clacu03g0733 Clacu-Chr3:8172960 5.80E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73431 PF07714 PK_Tyr_Ser-Thr 3.00E-55 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0733 - - - 0.0