Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0738 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAGATTCCAAGGTTCCCCAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCTTGTGCCGTTGAAATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGACTATAATTGGTTGTGATTGCAACATCGAGAACAGTACACTTTGTCACGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATAGTCAAACTTCCTCACCTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAATATACCTCAGGAATGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACATTACTGAACCTTGAAGCAAACCAATTTACTGGTGCAATACCATCACAACTCGGGAGGTTAAGCAACCTGCAAGACTTGTTGCTATCATCTAATCAATTGACTGGCACATTACCGACAACATTTGCTGGTTTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTAAATGGATCCATACCTGAGTTCATACAGAATTGGATACTACTCAACAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTTTTGAGGAACTTAAAAGAATTAAGGATCAGTGATATTAACGGGCCAAAGCAGGATTTTCCTGAGTTGAGAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGATGTTACCAGACATGGAAATGCTGGACGTCAGCTTTAACCATATAACAGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCGACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTTCGAAGTTCCTCCACCGGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTTGTTAATTCTGGTGGGAATGACTTAACTATGGAGGTTAACAACAGAAATGTTCTCTACAACGGGGATGCAGATGTTGAAGGTGGAACAGCAAAATTCTACATTGATCATGATAGCCACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGCTACACTTTATCCTTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTCAAGCTTCATTTTGCTGAGTTACAATTCACAGATGATAGGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAAGGCAGGAGGAACTCAAAAACCAGCCGAATTGCAGTTTAATAACATTAGTGTAATTAATCATGTTCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGAATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCCGCGAAAGTGGTAAAAAGAAAATTGTAGCAATTGCTGTTGGCATTGCGGTTGGATTATTATGCCTTGCTACAGTCATTATAGTGGGACTTCTTTGGTGGAAAGGCACTCTTAGAGCAATCAGGCGGAGTAAAGGTGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACGTTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAGATTGGAGAAGGTGGCTTTGGCCCCGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAACTCTCGTCCAAATCAAAGCAGGGAAATCGTGAATTTCTCAATGAGATAGGAATGATCTCTTGTTTGCAACACCCGAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATTATAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGCTTAGCATATCTCCATGAGGAATCAAGCCTCAAAATCGTTCACAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACCACTAGAGTGGCCGGGACTATAGGATATATGGCTCCGGAATATGCACTTTGGGGTTATCTGACCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTGGCCTTGGAAATTGTAAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTTATGGAGTTGGTAGATGAGAAGTTGAAACCAGAAATCGACAGGAAAGAAGCGGAAAATATGGTGAAAATAGCCCTTCTCTGCACCAATGCTTCACCATCAGTAAGGCCTGTGATGTCGGAAGTGGTGAACATGCTCGAAGGACGAATGGCGATTCCAGACCTGATCCCGGAACCGAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAAACAGCAACAGAGCCAAAGCCTGAGTGAAAGCCAAACCCAAAATTCCACAATGCAAACATTTGAGTCTTCCACTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCAACAACCTGA 3060 40.59 MMVAKSFFVFIVLVVDCFMFFRFADSKVPQEEVDVLQQITRTLGAVYWKFNSDSCAVEMFGVTEKSPRGSETIIGCDCNIENSTLCHVVRIEFKNHNLPGVLPPEIVKLPHLQVVDFAYNYLHGNIPQEWASMRLTSISLLVNRLSGEIPAELGNITTLTLLNLEANQFTGAIPSQLGRLSNLQDLLLSSNQLTGTLPTTFAGLKNLTNFRINDNNLNGSIPEFIQNWILLNRLELHASGLQGPIPAKISLLRNLKELRISDINGPKQDFPELRNMTGMVRLVLRNCNIAGKIPSYVWMLPDMEMLDVSFNHITGEIPEDINMERIRFLFLSGNMLSGDLPESILKDGTNVDLSYNNLTWQGPEQHACRKNLNMNLNLFRSSSTGNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNVLYNGDADVEGGTAKFYIDHDSHWGLSSTGDFMDDFDYQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLDNGNYSVKLHFAELQFTDDRTYTSLGRRKFDIYIQDRLVLENFDIEEKAGGTQKPAELQFNNISVINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKKKIVAIAVGIAVGLLCLATVIIVGLLWWKGTLRAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLKPEIDRKEAENMVKIALLCTNASPSVRPVMSEVVNMLEGRMAIPDLIPEPSSYNEDLRFKAMRDMRKQQQSQSLSESQTQNSTMQTFESSTTSGNEFYDINPEPRSSTT 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8195608 8208586 - ClG42_03g0073800.10 Clacu03g0738 245303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0738 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0738 1019 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Clacu03g0738 1019 Gene3D Ribonuclease Inhibitor 46 197 IPR032675 -
Clacu03g0738 1019 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 973 IPR051824 -
Clacu03g0738 1019 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Clacu03g0738 1019 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Clacu03g0738 1019 Gene3D - 405 600 - -
Clacu03g0738 1019 SUPERFAMILY L domain-like 76 318 - -
Clacu03g0738 1019 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515(InterPro)
Clacu03g0738 1019 Gene3D Transferase(Phosphotransferase) domain 1 752 954 - -
Clacu03g0738 1019 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Clacu03g0738 1019 CDD STKc_IRAK 682 949 - -
Clacu03g0738 1019 MobiDBLite consensus disorder prediction 973 1019 - -
Clacu03g0738 1019 SUPERFAMILY Protein kinase-like (PK-like) 659 949 IPR011009 -
Clacu03g0738 1019 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 646 751 - -
Clacu03g0738 1019 Pfam Malectin domain 406 594 IPR021720 -
Clacu03g0738 1019 MobiDBLite consensus disorder prediction 976 1019 - -
Clacu03g0738 1019 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Clacu03g0738 1019 SMART serkin_6 676 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0738 1019 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 958 - -
Clacu03g0738 1019 Gene3D Ribonuclease Inhibitor 266 392 IPR032675 -
Clacu03g0738 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Clacu03g0738 1019 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0738 1019 ProSiteProfiles Protein kinase domain profile. 676 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0738 Clacu-Chr3:8195608 Clacu11g1917 Clacu-Chr11:30161371 9.80E-201 dispersed
Clacu03g0738 Clacu-Chr3:8195608 Clacu11g1916 Clacu-Chr11:30145850 3.60E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73432 PF07714 PK_Tyr_Ser-Thr 4.20E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0738 - - - 0.0