Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0744 | ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATTTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTTGTTCCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACTGTCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGCCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTGAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATACAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCATTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACTCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGCTCACAAAGTTTGCATCTCTGAGAGCTCACAAAGCTATAGCCAAACACCTCGAAGAAACCAATAACGACTCTAAAAGATATGATCAAGGTCTTAAATTGCAAAGTGGCACAGTGTTTCGGATTAACAATTCAGTCGTGCAAGCCAACATCCAAAGACAAGTAACAATCACAAGCCTATTGGAGGTTCTCGACAAATCATCATTCAAGTCCTCGAAACAATATAGCTTTACTCTAAACATGGGTGCTCAGAAGGAAGGAGATATTAAACAAGAATACAAACTCTTTCTTCTCATGTTACAGAGTTTCATGCAGCTCACTGATATCTCCACCACAAAACATAAACCATCAATATTCACAGACTACAGGAAACAGAGAACTAATGGAAATGAAGCTTTGGCTGAAGCCACTCTCCCTAAATTGCTTTCCCTATTCATGATTCCTGAAGCATATGTGAACAACATGGAAGCAACAGATGCACTCATTGAAAAAGGAAAGGCTGCCCATTACTAA | 2643 | 45.1 | MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRIFVDERDEALRTRFLLFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYTMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNSVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISLTKFASLRAHKAIAKHLEETNNDSKRYDQGLKLQSGTVFRINNSVVQANIQRQVTITSLLEVLDKSSFKSSKQYSFTLNMGAQKEGDIKQEYKLFLLMLQSFMQLTDISTTKHKPSIFTDYRKQRTNGNEALAEATLPKLLSLFMIPEAYVNNMEATDALIEKGKAAHY | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8247712 | 8253954 | - | ClG42_03g0074400.10 | Clacu03g0744 | 245309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0744 | 880 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 362 | IPR013083 | - | |
Clacu03g0744 | 880 | SMART | arm_5 | 547 | 585 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | SMART | arm_5 | 506 | 546 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | SMART | arm_5 | 463 | 504 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | SMART | arm_5 | 587 | 627 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | SMART | arm_5 | 421 | 461 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | FunFam | RING-type E3 ubiquitin transferase | 287 | 362 | - | - | |
Clacu03g0744 | 880 | SMART | Ubox_2 | 291 | 354 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0744 | 880 | SUPERFAMILY | RING/U-box | 277 | 362 | - | - | |
Clacu03g0744 | 880 | CDD | RING-Ubox_PUB | 289 | 341 | IPR045210 | - | |
Clacu03g0744 | 880 | SUPERFAMILY | ARM repeat | 394 | 670 | IPR016024 | - | |
Clacu03g0744 | 880 | Pfam | U-box domain | 288 | 358 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0744 | 880 | PANTHER | U BOX DOMAIN-CONTAINING | 55 | 672 | - | - | |
Clacu03g0744 | 880 | Gene3D | - | 392 | 667 | IPR011989 | - | |
Clacu03g0744 | 880 | FunFam | RING-type E3 ubiquitin transferase | 364 | 685 | - | - | |
Clacu03g0744 | 880 | Coils | Coil | 212 | 232 | - | - | |
Clacu03g0744 | 880 | ProSiteProfiles | U-box domain profile. | 287 | 361 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0744 | 880 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 517 | 559 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | Pfam | Armadillo/beta-catenin-like repeat | 422 | 460 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0744 | 880 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 432 | 474 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0744 | Clacu-Chr3:8247712 | Clacu05g2310 | Clacu-Chr5:31476280 | 1.70E-44 | dispersed | |
Clacu03g1426 | Clacu-Chr3:27440584 | Clacu03g0744 | Clacu-Chr3:8247712 | 7.20E-11 | transposed | |
Clacu04g0698 | Clacu-Chr4:20999604 | Clacu03g0744 | Clacu-Chr3:8247712 | 2.30E-105 | transposed | |
Clacu08g1877 | Clacu-Chr8:28027309 | Clacu03g0744 | Clacu-Chr3:8247712 | 9.00E-37 | transposed | |
Clacu11g0750 | Clacu-Chr11:7341749 | Clacu03g0744 | Clacu-Chr3:8247712 | 2.30E-92 | transposed | |
Clacu03g0744 | Clacu-Chr3:8247712 | Clacu05g2536 | Clacu-Chr5:33431751 | 6.20E-10 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0744 | - | - | - | 0.0 |