Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0744 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATTTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTTGTTCCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACTGTCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGCCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTGAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATACAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCATTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACTCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGCTCACAAAGTTTGCATCTCTGAGAGCTCACAAAGCTATAGCCAAACACCTCGAAGAAACCAATAACGACTCTAAAAGATATGATCAAGGTCTTAAATTGCAAAGTGGCACAGTGTTTCGGATTAACAATTCAGTCGTGCAAGCCAACATCCAAAGACAAGTAACAATCACAAGCCTATTGGAGGTTCTCGACAAATCATCATTCAAGTCCTCGAAACAATATAGCTTTACTCTAAACATGGGTGCTCAGAAGGAAGGAGATATTAAACAAGAATACAAACTCTTTCTTCTCATGTTACAGAGTTTCATGCAGCTCACTGATATCTCCACCACAAAACATAAACCATCAATATTCACAGACTACAGGAAACAGAGAACTAATGGAAATGAAGCTTTGGCTGAAGCCACTCTCCCTAAATTGCTTTCCCTATTCATGATTCCTGAAGCATATGTGAACAACATGGAAGCAACAGATGCACTCATTGAAAAAGGAAAGGCTGCCCATTACTAA 2643 45.1 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRIFVDERDEALRTRFLLFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYTMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNSVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISLTKFASLRAHKAIAKHLEETNNDSKRYDQGLKLQSGTVFRINNSVVQANIQRQVTITSLLEVLDKSSFKSSKQYSFTLNMGAQKEGDIKQEYKLFLLMLQSFMQLTDISTTKHKPSIFTDYRKQRTNGNEALAEATLPKLLSLFMIPEAYVNNMEATDALIEKGKAAHY 880
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 8247712 8253954 - ClG42_03g0074400.10 Clacu03g0744 245309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0744 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Clacu03g0744 880 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 SMART arm_5 587 627 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Clacu03g0744 880 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0744 880 SUPERFAMILY RING/U-box 277 362 - -
Clacu03g0744 880 CDD RING-Ubox_PUB 289 341 IPR045210 -
Clacu03g0744 880 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Clacu03g0744 880 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0744 880 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Clacu03g0744 880 Gene3D - 392 667 IPR011989 -
Clacu03g0744 880 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Clacu03g0744 880 Coils Coil 212 232 - -
Clacu03g0744 880 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0744 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Clacu03g0744 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0744 Clacu-Chr3:8247712 Clacu05g2310 Clacu-Chr5:31476280 1.70E-44 dispersed
Clacu03g1426 Clacu-Chr3:27440584 Clacu03g0744 Clacu-Chr3:8247712 7.20E-11 transposed
Clacu04g0698 Clacu-Chr4:20999604 Clacu03g0744 Clacu-Chr3:8247712 2.30E-105 transposed
Clacu08g1877 Clacu-Chr8:28027309 Clacu03g0744 Clacu-Chr3:8247712 9.00E-37 transposed
Clacu11g0750 Clacu-Chr11:7341749 Clacu03g0744 Clacu-Chr3:8247712 2.30E-92 transposed
Clacu03g0744 Clacu-Chr3:8247712 Clacu05g2536 Clacu-Chr5:33431751 6.20E-10 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0744 - - - 0.0