Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0747 ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTGTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGATGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAAGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACGGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTGGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCTGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA 831 49.58 MDDNVTFNNNNHQFFSADQLEDSDESKPAPDSPPPNSAAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTDAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8311596 8312597 - ClG42_03g0074700.10 Clacu03g0747 245312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0747 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 25 244 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu03g0747 276 MobiDBLite consensus disorder prediction 134 153 - -
Clacu03g0747 276 FunFam WRKY transcription factor 65 59 136 - -
Clacu03g0747 276 MobiDBLite consensus disorder prediction 1 79 - -
Clacu03g0747 276 MobiDBLite consensus disorder prediction 61 76 - -
Clacu03g0747 276 MobiDBLite consensus disorder prediction 134 160 - -
Clacu03g0747 276 MobiDBLite consensus disorder prediction 1 17 - -
Clacu03g0747 276 Gene3D WRKY domain 63 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0747 276 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0747 276 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0747 276 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0747 276 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0747 Clacu-Chr3:8311596 Clacu03g0847 Clacu-Chr3:9981300 1.90E-29 dispersed
Clacu03g0747 Clacu-Chr3:8311596 Clacu07g0252 Clacu-Chr7:2882343 7.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47412 PF03106 WRKY 6.90E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0747 - - - 0.0