Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g0750 | ATGTCGGAGGCGCCACCGAGACGACTAAGAGGTCACAAAGGCACTGCCACGTGCTGCATCGCCTCGAATGACCGTCCTGGCCTCGTCGCTACTTCAGGCGAGGATGGTTATGTTTGCTGGTTTGACATGAGATGCAAAGATGTCGTATCCATTATGGAAGTAGGAAAAGAACCCATTTCATCCATATGTTTCAAGCCAGGGAATGAAGATGTTATTTACATCTCGTCTGGGAAGGAAATTAAGTCATTTGATGTCCATCAGGCCACATCATCAAAACCGTTGGGGAGTTATAGTTACAACAAAGAGGAGATAAATCAGGTTTCTTGTAGCTCCAAAGCTTCTTTTCTGGCTGCCGCTGATGATAGTGGTGATGTTAAGATCATTGATATTCACAATAATTGCCTATATAAAACATTAAGATCTGGCCATACAAGTATTTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCCTGGGAAGTTATTACAGGAGGACTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGCCCCATCAAAGTACTTGATTTTGATATCCCTGCCAACAACCCTTCCAGCAACACGGGACAATGTTTCAATCCTGCATTTGTTCATGCAATAGCAGTTCCTGAAGTTAATATGCTGGACAAAACAGGCCAGATATGTGTCGTTGCAAGGGGGGATGGTATTGTTCATGTGATTGATATTGAATCTGAGAAATTGAAGATTTCCTCAAAAACTGGTAAAAGAACACAAACAAGATCTAAGGGAGTTTCAGCGGCTTGTGATATGGATAACCAAACGCAAACTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGGCGTTTTCTCAATTTGGAGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAGATGCATAAAGCTTTGGAATTGGTGTGGAGTTCCTGATGCTGGGGAAACTAGCAGCAGCAACAACGATATTCTTCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTTTGTACTACTCCATCTGAATCAGAAAACCTTATCGTTTGTGATACCAGCAAAGTAGTGAAGATCCTTAAGAATAACAATTTTGAGTCTAAGAGTAGGCATTTGCTGAGAATCACCACCAAATATTACCTTCCTGACAAGGTGCAGCATCCTCCTATCTCCAGGAATCAACATTTCACCTTCATCCAAGCAAAAATTGATCGAAAGAAGAAGATTCAAACTCCAGTGAGAAGCGCACTTCAATTTGAAGATTCACAGACTCTGGAAGTCTGCGTTCAGTATGATATTAAGGAAGGTCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGAATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCCGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTACTGTGAAGACTGAACAGGAAGCTCAAATACCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGATTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCCCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAACTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAGGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAGTTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATTGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCGAAGGCTCAGAAAACGCCAGACGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCAGCAGTCCTCACAAACGCCCCATTCATTCTCAACCTTGACTGTGATCATTATGTTAACAATAGCCAAGCTATACGCGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATACGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTATGGACCTCCTACTCTGCCTAGCTTATCTAAGACGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGGTCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAATCTAAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCCTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATTAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGAAAATTTATCATACCAACGCTCTCAAACCTAG | 3264 | 42.56 | MSEAPPRRLRGHKGTATCCIASNDRPGLVATSGEDGYVCWFDMRCKDVVSIMEVGKEPISSICFKPGNEDVIYISSGKEIKSFDVHQATSSKPLGSYSYNKEEINQVSCSSKASFLAAADDSGDVKIIDIHNNCLYKTLRSGHTSICSSVQFLPWRPWEVITGGLDSKLIMWDFSRGRPIKVLDFDIPANNPSSNTGQCFNPAFVHAIAVPEVNMLDKTGQICVVARGDGIVHVIDIESEKLKISSKTGKRTQTRSKGVSAACDMDNQTQTGRKRLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDRCIKLWNWCGVPDAGETSSSNNDILHLNINLSKKVNWLCTTPSESENLIVCDTSKVVKILKNNNFESKSRHLLRITTKYYLPDKVQHPPISRNQHFTFIQAKIDRKKKIQTPVRSALQFEDSQTLEVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMESHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEEIAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTTSSSSCSWCGCCSCCCPSKKVSKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSENLSYQRSQT | 1087 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8352377 | 8371668 | + | ClG42_03g0075000.10 | Clacu03g0750 | 245315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g0750 | 1087 | SUPERFAMILY | WD40 repeat-like | 5 | 371 | IPR036322 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | SMART | WD40_4 | 132 | 173 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | SMART | WD40_4 | 45 | 84 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | SMART | WD40_4 | 2 | 42 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | SMART | WD40_4 | 90 | 129 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | SMART | WD40_4 | 275 | 317 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 574 | 1077 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
| Clacu03g0750 | 1087 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 282 | 317 | - | - | |
| Clacu03g0750 | 1087 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 804 | 946 | IPR029044 | - | |
| Clacu03g0750 | 1087 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 282 | 317 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | MobiDBLite | consensus disorder prediction | 518 | 546 | - | - | |
| Clacu03g0750 | 1087 | Pfam | Cellulose synthase | 654 | 1077 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
| Clacu03g0750 | 1087 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 140 | 182 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | FunFam | Cellulose synthase | 771 | 945 | - | - | |
| Clacu03g0750 | 1087 | MobiDBLite | consensus disorder prediction | 468 | 487 | - | - | |
| Clacu03g0750 | 1087 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 160 | 174 | IPR019775 | - | |
| Clacu03g0750 | 1087 | Gene3D | - | 217 | 405 | IPR015943 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | Gene3D | - | 2 | 207 | IPR015943 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | Pfam | WD domain, G-beta repeat | 280 | 317 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | Pfam | WD domain, G-beta repeat | 138 | 173 | IPR001680 | GO:0005515(InterPro) | |
| Clacu03g0750 | 1087 | Pfam | WD domain, G-beta repeat | 7 | 42 | IPR001680 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g0750 | Clacu-Chr3:8352377 | Clacu04g0354 | Clacu-Chr4:12458353 | 5.00E-227 | dispersed | |
| Clacu03g0750 | Clacu-Chr3:8352377 | Clacu02g0924 | Clacu-Chr2:11765247 | 2.90E-73 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g0750 | K10999 | - | csv:101208988 | 1930.22 |