Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0759 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGGTACGAGCTTGGGAGAATGCTTGGACAAGGCACTTTTGCTAAAGTCTACCATGCTCGTAATCTCAACTCTGGCCAGAGCGTGGCCATTAAAATCATTGACAAAGAGAAAGTGTTACGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTTATGCGCCTTGTCCGACATCCCAATGTGGTGCAGCTTTATGAGGTTATGGCTAGCAGGACCAAAATCTATTTTGCTATGGAGTATGTTAAAGGAGGGGAGCTTTTTAATAAAGTGGCTAAAGGGAAGCTTAAAGAAGATGCTGCTCGTAAGTACTTTCAACAGCTAATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTACCATAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGGTTAAGTGCTTTGGCCGAGTCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTTGAATTTTGATTGCTTTGTTTATTTTGCATTGAGATTATTGACTTTGAAATCATTGATTTGTATATGGTACGAGATATTGATGAATTTGCATTGGCAATTACTTGTTAAAAAAGGTTATGATGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTTCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCATGATCCAAATCTAATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAGATGCCCTCATTGGTTTCCCCCAGAAGTTCGAAAACTACTCTCAAGAATCCTTGACCCATATCCTCACACTAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAGGGTTTCAAAACAAATGTAGCAACTCCAAAACAACTTCAAATCAATGGCGATGTGTCGTATGTGAGCGATGTTCATTCCGCTTTCGACGACATTAGTTGGGATGAAGGAAGCTCTGTTAGTAACACCAGTGATAGTGGAAAGCCACCAACAGCTAAAGCCCCAATGAGACATAATTCCTTCAATGCATTTGACATCATATCTCTCTCACCAGGTTTTGATCTCTCAGGTTTGTTTGAGAGTGATGCGAATGAGAGGCCACAGTCTCGTTTCACGACCACGAAACCTGCATCCGCGATCGTGTCGAAGTTTGAGGAAATAGCAGAAATGGAAAGGTTCAAAGTGATGAAGAAAGATGGGATTGTTAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGACAATTGGCTATAGATGCTGAAATATTTGAAGTAACACCTTCATTTTTTGTGGTGGAAGTGAAGAAAACTGCTGGAGACACATTGGAATATAGGCAATTTTACAACAAAGACATGAGACCTTGTCTTAAGGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAACAACAACAACCACAATCACAAATTGTTTAG 1515 40.59 MEKKGTILMQRYELGRMLGQGTFAKVYHARNLNSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGLNFDCFVYFALRLLTLKSLICIWYEILMNLHWQLLVKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPHWFPPEVRKLLSRILDPYPHTRINMAKLMENSWFKKGFKTNVATPKQLQINGDVSYVSDVHSAFDDISWDEGSSVSNTSDSGKPPTAKAPMRHNSFNAFDIISLSPGFDLSGLFESDANERPQSRFTTTKPASAIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGNEQQQQQQPQSQIV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8455200 8456714 - ClG42_03g0075900.10 Clacu03g0759 245324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0759 504 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Clacu03g0759 504 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 479 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu03g0759 504 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Clacu03g0759 504 Gene3D Transferase(Phosphotransferase) domain 1 3 215 - -
Clacu03g0759 504 Gene3D Transferase(Phosphotransferase) domain 1 216 351 - -
Clacu03g0759 504 Gene3D Kinase associated domain 1, KA1 362 487 - -
Clacu03g0759 504 MobiDBLite consensus disorder prediction 342 362 - -
Clacu03g0759 504 SMART serkin_6 12 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0759 504 Pfam Protein kinase domain 223 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0759 504 Pfam Protein kinase domain 12 188 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0759 504 SUPERFAMILY Protein kinase-like (PK-like) 8 356 IPR011009 -
Clacu03g0759 504 Pfam NAF domain 365 423 IPR004041 GO:0007165(InterPro)
Clacu03g0759 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0759 504 ProSiteProfiles NAF domain profile. 362 386 IPR018451 GO:0007165(InterPro)
Clacu03g0759 504 CDD CIPK_C 368 482 - -
Clacu03g0759 504 FunFam Maternal embryonic leucine zipper kinase 2 213 - -
Clacu03g0759 504 ProSiteProfiles Protein kinase domain profile. 12 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0759 504 FunFam Non-specific serine/threonine protein kinase 362 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0759 Clacu-Chr3:8455200 Clacu04g0701 Clacu-Chr4:21130902 4.20E-168 dispersed
Clacu01g2460 Clacu-Chr1:35068205 Clacu03g0759 Clacu-Chr3:8455200 2.80E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73436 PF00069 Pkinase 1.80E-55 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0759 K07198 - csv:101206082 820.076