Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0787 ATGCCTGTCCCTTTTTCTCTCCTCTGTTTTCTCACTCTGCTCCTCAGTTTCCACACACCATTAAAATGTGCAGCAGCAGCAGCAGCACCACCTAAACAAGCCTCCGCCCGCCGCCACCGCCTCCTCTCCCTCGACTACTACAACAAAACATGCCCTCACCTCGACCAACTCGTCTCCTCAATCACTACCCAACAGTTCAGAGATGCACCAGTCTCTGCTCCAGCAACACTCCGCCTCTTCTTCCATGATTGCTTTGTAGAAGGTTGTGATGGGTCGATTCTGATATCAACAAAGCCAGGCAGCAAAGTGGCGGCGGAAAAGGATGCAGCGGACAACAAAGGGCTGAGACCGGAAGGATTTGAAAGCATCAAGAAAGCGAAGGCGTTGGTTGAGAGCAAGTGCCCTGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGGCCATATTACCAGGTGAAGAAGGGTCGATGGGACGGGAAGATATCGATGGCGTCCAGAGTAGGTTCCAATCTGCCGCGAGCAAATTCTACCGTCGATCAGCTTCTCAAACTCTTCAATTCCAAAGGTCTATCCGCCGATGACCTCGTTGTCCTCTCAGGTGCGCATACGATTGGATTTGCGCACTGCGAGCACTTCGCGAACCGTCTTTACGACTACAGAGGCACGAAGCAACCGGATCCGGCGATCGACGGGAGGCTGCTGAAGGAGCTTAAAATGTCGTGCCCTAGGTACGGCGGAAATACGGATATAGTGGCGCCGTTCGACGTAACGACGCCGTTTGTGTTCGATCATGCGTACTACGGGAATTTGGAAAGTAAATTGGGACTGTTGGCTACGGATCAAGCTCTGGTTTCTGATGCGAGGATGAAGACGATGGTGCAGAGTTTTGCGAAGGATAAGCAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGGTCGATTGGTGTGAAGAGGGGACGAAGACATGGAGAGCGAAGGACGGATTGTAGCGTTCATCAGAGTTAA 1044 52.01 MPVPFSLLCFLTLLLSFHTPLKCAAAAAAPPKQASARRHRLLSLDYYNKTCPHLDQLVSSITTQQFRDAPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRPEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMASRVGSNLPRANSTVDQLLKLFNSKGLSADDLVVLSGAHTIGFAHCEHFANRLYDYRGTKQPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLESKLGLLATDQALVSDARMKTMVQSFAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDCSVHQS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8842214 8844997 + ClG42_03g0078700.10 Clacu03g0787 245352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0787 347 Gene3D Peroxidase, domain 2 182 324 - -
Clacu03g0787 347 FunFam Peroxidase 45 191 - -
Clacu03g0787 347 Pfam Peroxidase 60 309 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
Clacu03g0787 347 Gene3D - 45 344 - -
Clacu03g0787 347 FunFam Peroxidase 182 324 - -
Clacu03g0787 347 ProSitePatterns Peroxidases active site signature. 73 84 IPR019794 GO:0004601(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 156 171 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 118 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 137 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 279 296 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 51 70 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 263 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 319 332 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Plant peroxidase signature 75 95 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 CDD secretory_peroxidase 42 344 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu03g0787 347 SUPERFAMILY Heme-dependent peroxidases 42 344 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Haem peroxidase superfamily signature 73 87 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Haem peroxidase superfamily signature 156 168 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Haem peroxidase superfamily signature 138 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PRINTS Haem peroxidase superfamily signature 265 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 PANTHER - 24 344 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0787 347 ProSiteProfiles Plant heme peroxidase family profile. 41 346 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0787 Clacu-Chr3:8842214 Clacu11g0924 Clacu-Chr11:8916384 3.70E-75 dispersed
Clacu03g0787 Clacu-Chr3:8842214 Clacu11g0921 Clacu-Chr11:8872742 5.70E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0787 K00430 - csv:101216263 645.58