Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0792 ATGCTTCTCCACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCTCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTTTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCAAGCTTAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAACTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGAAACTTGCCTGTTCTTAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATGTCCCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCTTACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTGCTGCGTTCAATCTTCGTCCTTGCCGGTATCGTGTTCATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGACACTCTGGGAAAGATTAGGCACAAAAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGATTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGCGTCCCTCCAATCGTTCATCGCGACGTTAAGTCAAACAACATCTTGTTGGATGGCGATTTCGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATTGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGCGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACCTAGTGAAATGGGTGTGTTTCACATTGGATCAAGATGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3009 46.1 MLLHPFFFFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSFGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSYNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8907345 8910455 - ClG42_03g0079200.10 Clacu03g0792 245357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0792 1002 Gene3D Ribonuclease Inhibitor 265 335 IPR032675 -
Clacu03g0792 1002 Gene3D Ribonuclease Inhibitor 206 264 IPR032675 -
Clacu03g0792 1002 Gene3D Ribonuclease Inhibitor 336 621 IPR032675 -
Clacu03g0792 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Clacu03g0792 1002 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0792 1002 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Clacu03g0792 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Clacu03g0792 1002 SUPERFAMILY RNI-like 270 606 - -
Clacu03g0792 1002 SUPERFAMILY L domain-like 36 374 - -
Clacu03g0792 1002 Gene3D Phosphorylase Kinase; domain 1 653 776 - -
Clacu03g0792 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 191 - -
Clacu03g0792 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Clacu03g0792 1002 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0792 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 362 381 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 269 288 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 577 596 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Clacu03g0792 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Clacu03g0792 1002 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Clacu03g0792 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 972 IPR050647 -
Clacu03g0792 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Clacu03g0792 1002 Gene3D Ribonuclease Inhibitor 27 205 IPR032675 -
Clacu03g0792 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Clacu03g0792 1002 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0792 1002 SMART LRR_typ_2 95 119 IPR003591 -
Clacu03g0792 1002 SMART LRR_typ_2 288 312 IPR003591 -
Clacu03g0792 1002 SMART LRR_typ_2 143 166 IPR003591 -
Clacu03g0792 1002 SMART LRR_typ_2 216 240 IPR003591 -
Clacu03g0792 1002 SMART LRR_typ_2 503 526 IPR003591 -
Clacu03g0792 1002 SMART LRR_typ_2 191 215 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0240 Clacu-Chr2:2264648 Clacu03g0792 Clacu-Chr3:8907345 3.30E-169 dispersed
Clacu03g0792 Clacu-Chr3:8907345 Clacu10g0804 Clacu-Chr10:13660984 6.00E-94 dispersed
Clacu03g0994 Clacu-Chr3:15832690 Clacu03g0792 Clacu-Chr3:8907345 8.00E-13 transposed
Clacu01g2411 Clacu-Chr1:34704091 Clacu03g0792 Clacu-Chr3:8907345 3.60E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73438 PF00069 Pkinase 1.50E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0792 - - - 0.0