Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0811 ATGGATGAAGATGCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGTTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGTGGTCACTCAGCCACCACTCAAATCAGTCGCACAATCAAGATCAACCCTTCCTAATAACCTAACCAAGCAGAGGTCTTTATCTCCTCCTCCACAAACTACACTCTCCGGCGCATTTAAGGATGCACGTACCGATCAAAAACGATTTTCAACTCCACAGCCTCAGAGGAAAGAACATGTAAAAGAAAAGGGTAAAAGGCTATTTAGTAAAAAAGCTAAGGTGCAAAATTCCCTGAAGGAAGAGAAGTTAAAAGGACCTTTGAGGCATCTTATATCTTTTAAAGGCAATGATAAGTTCAAATTCAAGGAGTCTTCTTGGACTAAGTTTGGCGGAGGGAAGGTCACTGCTGTTGAAGCTGAAGACGAATCGTCTATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGGCTATACCATGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGTCCATGACGAAAATGGCGATCTCGCAGCTCGCTTAATAAAGCAATTTGGTAGGGAAGTAACCCTTTTGTCTCGTCTCCATCATCGCAATGTTATAAAGTTAGTAGCAGCAGTGAAAAAGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGGGATCTCAAACCTGAGAACATTCTTATTGATCAAGACTTTTGTCTAAAGATTGCCGATTTTGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCCGGAACTTTTCGTTGGATGGCCCCCGAGATGATCAAACGGAAACCTTACAGGAGAAAGGTCGATATCTACAGCTTCGGACTTCTCCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATCCCGGGGGAGTGTCCTCCAGTGATGCAGATGTTAATCGAGCAATGTTGGTGCGAGAAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTGTTAGAGCAACTTGAGAGTTGTGTTGGGGAAGATGGTACATTGATGACGAATGTAGAGGTAGAGTTAGAGGGGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAGAAGTTTGGTCCTCTTCATTCTCATACTTCTCTCACCTCCAAATCTAAATTCATATGA 1425 42.67 MDEDANSWLRRTKFSHTICYRLESLRLASFPVVTQPPLKSVAQSRSTLPNNLTKQRSLSPPPQTTLSGAFKDARTDQKRFSTPQPQRKEHVKEKGKRLFSKKAKVQNSLKEEKLKGPLRHLISFKGNDKFKFKESSWTKFGGGKVTAVEAEDESSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPVHDENGDLAARLIKQFGREVTLLSRLHHRNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYRRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPGECPPVMQMLIEQCWCEKPEKRPEFWQVVKVLEQLESCVGEDGTLMTNVEVELEGKPSWEDHKKGLKHWIQKFGPLHSHTSLTSKSKFI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9132426 9134165 + ClG42_03g0081100.10 Clacu03g0811 245376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0811 474 SMART serkin_6 161 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 PANTHER SERINE-THREONINE PROTEIN KINASE 59 420 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu03g0811 474 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 PRINTS Tyrosine kinase catalytic domain signature 241 254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 PRINTS Tyrosine kinase catalytic domain signature 325 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 ProSiteProfiles Protein kinase domain profile. 161 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 Gene3D Transferase(Phosphotransferase) domain 1 245 452 - -
Clacu03g0811 474 MobiDBLite consensus disorder prediction 39 71 - -
Clacu03g0811 474 MobiDBLite consensus disorder prediction 72 93 - -
Clacu03g0811 474 Gene3D Phosphorylase Kinase; domain 1 150 244 - -
Clacu03g0811 474 FunFam serine/threonine-protein kinase HT1 246 437 - -
Clacu03g0811 474 Pfam Protein tyrosine and serine/threonine kinase 165 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0811 474 MobiDBLite consensus disorder prediction 39 98 - -
Clacu03g0811 474 SUPERFAMILY Protein kinase-like (PK-like) 153 417 IPR011009 -
Clacu03g0811 474 CDD STKc_MAP3K-like 168 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0811 Clacu-Chr3:9132426 Clacu11g1310 Clacu-Chr11:22301673 1.40E-72 dispersed
Clacu01g2385 Clacu-Chr1:34526617 Clacu03g0811 Clacu-Chr3:9132426 2.90E-166 wgd
Clacu03g0811 Clacu-Chr3:9132426 Clacu05g2479 Clacu-Chr5:32901186 7.20E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73439 PF07714 PK_Tyr_Ser-Thr 9.70E-60 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0811 - - - 0.0