Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0847 ATGTTCTGTAGTTTGTTTGAGATGGACAACAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGCCGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGACTCTGGCCTCACCTAACCGCCGATGAATCTTCAATGAATTTTGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCCTTCAATTTAGCTTCTGACGGCGGCAGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTCCGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGGCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGTGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCACCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAGAAAAAGCAATAGTAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTCCCTTATGACTTAATTTTCACTGAATTTGCTGACCATGACAACGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACATCATCTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1224 49.26 MFCSLFEMDNNYQQAGDLTDVIRLSSAAVAGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDGGSEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSPCSASACSGGVVLPTGGSNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTTPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTEKAIVTTTNDHQEDGDHQNFPYDLIFTEFADHDNDHDHHHLSADPLNNIIFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9981300 9985040 + ClG42_03g0084700.10 Clacu03g0847 245412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0847 407 MobiDBLite consensus disorder prediction 259 314 - -
Clacu03g0847 407 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0847 407 SMART WRKY_cls 204 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0847 407 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 72 358 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Clacu03g0847 407 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0847 407 FunFam probable WRKY transcription factor 14 177 258 - -
Clacu03g0847 407 Gene3D WRKY domain 177 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0847 407 MobiDBLite consensus disorder prediction 259 289 - -
Clacu03g0847 407 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2621 Clacu-Chr1:36359525 Clacu03g0847 Clacu-Chr3:9981300 2.10E-52 dispersed
Clacu03g0747 Clacu-Chr3:8311596 Clacu03g0847 Clacu-Chr3:9981300 1.90E-29 dispersed
Clacu03g0847 Clacu-Chr3:9981300 Clacu07g0780 Clacu-Chr7:19791952 5.60E-30 dispersed
Clacu03g0847 Clacu-Chr3:9981300 Clacu05g0150 Clacu-Chr5:1412043 9.50E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47424 PF03106 WRKY 4.10E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0847 - - - 0.0