Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0858 | ATGGCACTTGCAAATTCAGCTCTACAAGAACTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAGCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGATCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGCACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA | 882 | 40.25 | MALANSALQELDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10227376 | 10230043 | - | ClG42_03g0085800.10 | Clacu03g0858 | 245423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0858 | 293 | CDD | bHLH_AtIND_like | 197 | 259 | - | - | |
Clacu03g0858 | 293 | FunFam | Transcription factor bHLH83 | 194 | 253 | - | - | |
Clacu03g0858 | 293 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 196 | 245 | IPR011598 | GO:0046983(InterPro) | |
Clacu03g0858 | 293 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 54 | 258 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g0858 | 293 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 194 | 254 | IPR036638 | GO:0046983(InterPro) | |
Clacu03g0858 | 293 | SMART | finulus | 202 | 251 | IPR011598 | GO:0046983(InterPro) | |
Clacu03g0858 | 293 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
Clacu03g0858 | 293 | Pfam | Helix-loop-helix DNA-binding domain | 204 | 246 | IPR011598 | GO:0046983(InterPro) | |
Clacu03g0858 | 293 | Gene3D | - | 189 | 253 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0721 | Clacu-Chr2:7480653 | Clacu03g0858 | Clacu-Chr3:10227376 | 5.00E-18 | dispersed | |
Clacu03g0858 | Clacu-Chr3:10227376 | Clacu10g1039 | Clacu-Chr10:22265571 | 2.10E-18 | dispersed | |
Clacu03g0858 | Clacu-Chr3:10227376 | Clacu05g2250 | Clacu-Chr5:30921332 | 1.60E-18 | transposed | |
Clacu03g0858 | Clacu-Chr3:10227376 | Clacu08g1804 | Clacu-Chr8:27353810 | 1.60E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47426 | PF00010 | HLH | 9.40E-08 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0858 | - | - | - | 0.0 |