Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0858 ATGGCACTTGCAAATTCAGCTCTACAAGAACTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAGCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGATCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGCACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA 882 40.25 MALANSALQELDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10227376 10230043 - ClG42_03g0085800.10 Clacu03g0858 245423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0858 293 CDD bHLH_AtIND_like 197 259 - -
Clacu03g0858 293 FunFam Transcription factor bHLH83 194 253 - -
Clacu03g0858 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983(InterPro)
Clacu03g0858 293 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 54 258 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g0858 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 254 IPR036638 GO:0046983(InterPro)
Clacu03g0858 293 SMART finulus 202 251 IPR011598 GO:0046983(InterPro)
Clacu03g0858 293 MobiDBLite consensus disorder prediction 189 208 - -
Clacu03g0858 293 Pfam Helix-loop-helix DNA-binding domain 204 246 IPR011598 GO:0046983(InterPro)
Clacu03g0858 293 Gene3D - 189 253 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0721 Clacu-Chr2:7480653 Clacu03g0858 Clacu-Chr3:10227376 5.00E-18 dispersed
Clacu03g0858 Clacu-Chr3:10227376 Clacu10g1039 Clacu-Chr10:22265571 2.10E-18 dispersed
Clacu03g0858 Clacu-Chr3:10227376 Clacu05g2250 Clacu-Chr5:30921332 1.60E-18 transposed
Clacu03g0858 Clacu-Chr3:10227376 Clacu08g1804 Clacu-Chr8:27353810 1.60E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47426 PF00010 HLH 9.40E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0858 - - - 0.0