Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0891 ATGGGTTCTTTGCCTTCCGAAGCTTTGGCCGTCGAAATTACCGACACCCATATTCATACCGTCGCCGGTGCCGGCGCAGAAACCTCTGAATGGCTTCTCAATTCCCCCAACCCTCCAACTTTGTGGGAAGAAATTGTGGACGCCATCAAAGGAAATGCAGTTCCTCGAAGTTGCACAAAGAACCCCAACAAAAACACTTCTTCTTCTTCAAGCTCTGGAAAACAGAGCATTTTCAAAACGATACTTTCCCTTCTGCAGAGAGTGTTCCCGATCCTTAAATTGCCTCGAAATTACAAAGCCTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCAGCATCCCTCAGAGTATTGGGTATGCTAACTTGGCAAAGCTTGATCCTCAGTTCGGTCTCTATACAAGTGTTGTTCCTCCTTTGATTTATGCATTTATGGGGAGTTCGAGAGAGATAGCGATTGGACCGGTGGCTGTGGTTTCATTGCTTCTTTCGTCTATGCTTCAAGAAATTCAAGATCCTGTTGCAGACTCAGTTGCTTATAGAAGGCTTGTTTTCACTGTAACTTTATTTGCAGGGATTTTCCAAGCATCATTTGGACTCTTGAGACTGGGTTTTCTTGTGGACTTCCTATCTCATGCTGCCATTGTTGGGTTCATGGCTGGGGCTGCCATTCTCATTGGTCTTCAACAAATGAAAGGCTTACTTGCCATCAGCAACTTCACCGCTAAAACTGATGTGGTTTCTGTTTTGGAGTCTGTGGTGAAATCTGTTCACCAGACTTGGTACCCTTTGAACATTGTACTTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCCAGGTTCATAGGCAGAAGGAAGAAGAAGCTATTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTTATTCTCTCCACTTTGATAGTGTTTGTTTCAAGAGCTGACAAACATGGAGTTAAGATAGTGAAGGAAGTGAAAAAAGGACTGAACCCAATCTCCATTCATCAGCTTCAATTGAACAGCTCAACTGTTGGGTTAGCTGCAAAAGCTGGCCTCATTGCTGCTCTTATAGCTCTCACAGAAGCCATCGCGGTGGGCCGATCGTTCGCCTCGATTAAAGGCTACAGCATTGATGGGAACAAGGAGATGATAGCCATGGGATTGATGAACATAATAGGCTCTTTAACATCTTGTTACATAGCGACTGGGTCATTCTCAAGAACTGCTGTGAATTATAGTGCTGGGTGTGAAAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGGTGACACTGCAATTTATGACTCGGTTTCTTTACTTTACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCAGCTCTTCCTGGTCTCATTGACATTAATGAAGCTTTGCATATTTGGAAGGTTGATAAGCTTGACTTTCTTGCCTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCGGTCGAATTTGGCCTTCTTGTAGCGGTTGGAATTTCATTTGCAAAAATATTGTTGATTTCAGTAAGACCAGCCACAGAAGAGGTGGGAAGGCTTCCAAGAAGTGAGATGTTTTGCAACATGAAGCAATTCCCCATGGCCACCAAAACTCAAGGACTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCTAGTTTCATTAGAGACAGGATAATGAGATTGGTGGAAGATGATAATGATGATGATATTGAAGAAAAAACAGCAAAAGATCAACCTAAACAAGTAGTTGTTGACATGTGCAATGTTTTGAATATCGATACATCAGGAATCATTGCTTTAGAGGAACTTCACAAAAGGTTGTTGTTGCACGGCATTCAACTAACAATAGCCAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAGACAAACTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCCTGCCTTGGAAATGCTTCCAAATTGCCTTATCCCTTACCAAAGTCATTGTGA 2028 42.6 MGSLPSEALAVEITDTHIHTVAGAGAETSEWLLNSPNPPTLWEEIVDAIKGNAVPRSCTKNPNKNTSSSSSSGKQSIFKTILSLLQRVFPILKLPRNYKASKFKNDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADSVAYRRLVFTVTLFAGIFQASFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTAKTDVVSVLESVVKSVHQTWYPLNIVLGCSFLIFLLVARFIGRRKKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKKGLNPISIHQLQLNSSTVGLAAKAGLIAALIALTEAIAVGRSFASIKGYSIDGNKEMIAMGLMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAITVMVTLQFMTRFLYFTPMAILASIILSALPGLIDINEALHIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISVRPATEEVGRLPRSEMFCNMKQFPMATKTQGLSIIRINSALLCFANASFIRDRIMRLVEDDNDDDIEEKTAKDQPKQVVVDMCNVLNIDTSGIIALEELHKRLLLHGIQLTIASPKWEVIHKLKKTNFVERIEGRVFLSVGEAVDSCLGNASKLPYPLPKSL 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11037732 11043914 - ClG42_03g0089100.10 Clacu03g0891 245456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0891 675 SUPERFAMILY SpoIIaa-like 542 660 IPR036513 -
Clacu03g0891 675 CDD STAS_SulP_like_sulfate_transporter 536 651 - -
Clacu03g0891 675 Pfam STAS domain 537 656 IPR002645 -
Clacu03g0891 675 PANTHER SULFATE TRANSPORTER 74 661 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0891 675 MobiDBLite consensus disorder prediction 56 73 - -
Clacu03g0891 675 NCBIfam sulfate permease 90 653 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0891 675 ProSiteProfiles STAS domain profile. 555 660 IPR002645 -
Clacu03g0891 675 ProSitePatterns SLC26A transporters signature. 132 153 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Clacu03g0891 675 Gene3D STAS domain 515 662 IPR036513 -
Clacu03g0891 675 Pfam Sulfate permease family 103 483 IPR011547 GO:0016020(InterPro)
Clacu03g0891 675 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0891 Clacu-Chr3:11037732 Clacu09g1592 Clacu-Chr9:27444859 7.50E-165 dispersed
Clacu03g0891 Clacu-Chr3:11037732 Clacu03g0892 Clacu-Chr3:11079511 2.30E-169 tandem
Clacu07g0946 Clacu-Chr7:23482694 Clacu03g0891 Clacu-Chr3:11037732 7.70E-223 transposed
Clacu11g1713 Clacu-Chr11:28382739 Clacu03g0891 Clacu-Chr3:11037732 2.20E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0891 K17469 - csv:101211892 1112.06