Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0892 ATGGACTCAAGAGGCCATTCCAATGGCAGAGAACTCGAAACAAAGGAGATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACACAGTGCATTCATAAGGTGGGGGTTCCACCAAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTCGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCTCGAAAGTTGGTCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAGTTACAATTTGACTAAATTTAGAGGAGATATAATTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTAATGGGTAGCTCAAGAGACATAGCGATTGGACCCGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATAGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAGTTTACAAAGAAAACAGACATTATTTCTGTAATGCGCTCAGTATTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTATGTTTTCTTCTATTAGCCAAGTATATTGGAAAGAAAAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGTAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGTGCAGTGGCTGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTAGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAATTCATCACGCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCTGTTCTCGGAAAGATCCCTAGGACTACAGTATACAGGAACACTCAACAGTATCCAGAAGCAACAAAGGTTCCTGGCATTCTCATTGTGAGAGTTGATTCTGCAATTTACTTTTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAAAAAAGAAGGCTTATTCAACAAAACCTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGAATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAACGAGACATTCAGCTTGTTTTGGCAAACCCTGGGCCGGTAGTGATTGACAAACTCCACGCATCCAATCTTGCTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTCTCATCTTGCTCCCCAAAATTGGTGGAAGAAGCCTAG 1977 41.73 MDSRGHSNGRELETKEMDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRSYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLCFLLLAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHVDQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATKVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQKKKAYSTKPQFLIVEMSPVTDIDTSGIHALEELYRNLQKRDIQLVLANPGPVVIDKLHASNLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11079511 11083654 + ClG42_03g0089200.10 Clacu03g0892 245457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0892 658 FunFam Sulfate transporter 31 507 653 - -
Clacu03g0892 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Clacu03g0892 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020(InterPro)
Clacu03g0892 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Clacu03g0892 658 Pfam STAS domain 528 646 IPR002645 -
Clacu03g0892 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Clacu03g0892 658 Gene3D STAS domain 507 653 IPR036513 -
Clacu03g0892 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Clacu03g0892 658 PANTHER SULFATE TRANSPORTER 50 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0892 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0892 Clacu-Chr3:11079511 Clacu11g1713 Clacu-Chr11:28382739 9.80E-303 dispersed
Clacu03g0891 Clacu-Chr3:11037732 Clacu03g0892 Clacu-Chr3:11079511 2.30E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0892 K17470 - csv:101212138 1219.53