Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0915 ATGAATGTCTTCCCACAACGGCCTCACTATGTAATCAAAGGTTGGAGGTTGGTCCCGAGTGCCTTGTTTGTAGGAGGAAAGAAGAATCATCATCTCAATGATATGGAATTGGTCAAAGCTTGTATCATTGCCTGGGCAATCTGGGATAATAGAAATAAGTTTATGCACTTAAAGATAATTCAGTTGGTTATAGGTCGTTATGAGTGGATCCTTGATTATGCAGTAGAAGTTGGGGCTTTGCCTAAAGAGCTTAGCAATGTTGAAATTGTTTATTTTCCTTCATATGACATAAACAGTCACAATATGCATATCCTTCATGTTGATGCAGCTTGTGTGCAAAATACATTAGAAATTGGCTACATGGATCCTCTTCTGGAAGTGGCTTCCGTGGTGGTCGATATTAAGGATGCCTCGTCAAAATTTGGAGCGTTGGGATGCTTGTTAACAGTGATGCTATTGCATTATAGTACTGTGAAGCTTGACATGGCTTGGCCAAAGTTTTTTTCTCCTAGGAAGAAAGGAAAACCCATGGATCCGAGGAAAATCGCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAACATTGACTATGATGCTACTTCCTCGTCTTCTTCGCTTGAAGATTCTTCTGGGTCTCTCTATACTCGCTCCATGGAGACCCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTTGCTATTCCGATGGAGGCATGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCCATGGACACCTCCCCGAAGACCGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATGGAAGATGAATTGTGCCGGAGAGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTGTCCACGCCTAAGTCGGAATTTCCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCTCGGCCTCCTTTACTCAAGCCACCGCCGTCGATGAGGCTTCCAAATTTGGATAATACTTGCTCCACTTGGGACATTTTGAAAGCTTTTGCTCCATTAGTTGATGATGAACATCAGGAGGAAGTAGGAGAACGAGTGGAACCATTAGTTGAAGGAGAAGGAGAGGGAAATATTGTGAGGCCCGTGATGCGCATAGGGTCTTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTTGTCCCATTATCACATCCTGGGTGGTCGGCAGGCTTCTTGGACGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGTACGTTCTTTGCACTGAAAGAAGTTTCACTGCTCGAGGATGATAGTCAGGGAAGACAAAGTATCGATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACGCATTCGGATGGGTCAAAACTCTATATCTTCCTCGAGCTTGTATCTCAGGGCTCCCTTATGAGTCTATATCAAAGGACAATCCTTATGGACTCCATTGTTTCTGCCTACACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATAAAAATGGATCTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTGCGTATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATATTCAGAACTCGAATCTCATATGCAAGCACTATTTAGGATTGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCGGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTATTAAATCACTCGTTTGTGAAAAGACCAGTTTCCAGTTTATCAGGGTCGGCATCTCCTTACAACAGGCCAGGCAGAAGGATTTAA 2166 44.83 MNVFPQRPHYVIKGWRLVPSALFVGGKKNHHLNDMELVKACIIAWAIWDNRNKFMHLKIIQLVIGRYEWILDYAVEVGALPKELSNVEIVYFPSYDINSHNMHILHVDAACVQNTLEIGYMDPLLEVASVVVDIKDASSKFGALGCLLTVMLLHYSTVKLDMAWPKFFSPRKKGKPMDPRKIAGKPKLGRLNAAKNIDYDATSSSSSLEDSSGSLYTRSMETPDPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISKDKEDKEMEDELCRRVKDSVRISVELSTPKSEFPELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNLDNTCSTWDILKAFAPLVDDEHQEEVGERVEPLVEGEGEGNIVRPVMRIGSWGSFTTSNDDDSSSSTTEPANISPNMRGCPIITSWVVGRLLGRGSFGSVYEAISEDGTFFALKEVSLLEDDSQGRQSIDQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTILMDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDKNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALFRIGKGKPPAVPESLPKDAQDFIRQCLQVNPKDRPTAADLLNHSFVKRPVSSLSGSASPYNRPGRRI 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11710322 11718696 + ClG42_03g0091500.10 Clacu03g0915 245480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0915 721 ProSiteProfiles Protein kinase domain profile. 446 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 MobiDBLite consensus disorder prediction 284 299 - -
Clacu03g0915 721 Gene3D Transferase(Phosphotransferase) domain 1 444 713 - -
Clacu03g0915 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 SUPERFAMILY Protein kinase-like (PK-like) 427 707 IPR011009 -
Clacu03g0915 721 PRINTS Tyrosine kinase catalytic domain signature 524 537 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 PRINTS Tyrosine kinase catalytic domain signature 669 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 PRINTS Tyrosine kinase catalytic domain signature 625 647 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 PRINTS Tyrosine kinase catalytic domain signature 559 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 MobiDBLite consensus disorder prediction 202 222 - -
Clacu03g0915 721 FunFam Mitogen-activated protein kinase 1, putative, expressed 444 712 - -
Clacu03g0915 721 MobiDBLite consensus disorder prediction 333 356 - -
Clacu03g0915 721 MobiDBLite consensus disorder prediction 413 434 - -
Clacu03g0915 721 SMART serkin_6 446 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0915 721 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524(InterPro)
Clacu03g0915 721 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 273 702 IPR050538 -
Clacu03g0915 721 MobiDBLite consensus disorder prediction 275 299 - -
Clacu03g0915 721 Pfam Protein kinase domain 447 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0915 Clacu-Chr3:11710322 Clacu08g1718 Clacu-Chr8:26694640 2.80E-56 dispersed
Clacu03g0915 Clacu-Chr3:11710322 Clacu05g0965 Clacu-Chr5:8561300 9.40E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73442 PF00069 Pkinase 6.60E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0915 K13414 - csv:101218538 1001.12