Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0934 ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGTAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTTTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGTATCAGCTACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTTAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATCAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGATGGCTGCAGAGGCTACCGGAGGGGAAGCTGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTTGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA 1272 44.18 MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKMAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12157026 12158382 + ClG42_03g0093400.10 Clacu03g0934 245499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0934 423 Gene3D - 211 421 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 52 70 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 108 127 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 93 107 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 42 70 - -
Clacu03g0934 423 SUPERFAMILY ADP-ribosylation 212 421 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 93 127 - -
Clacu03g0934 423 MobiDBLite consensus disorder prediction 1 28 - -
Clacu03g0934 423 ProSitePatterns Zinc finger C2H2 type domain signature. 187 210 IPR013087 -
Clacu03g0934 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 215 IPR013087 -
Clacu03g0934 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2019 Clacu-Chr2:33609895 Clacu03g0934 Clacu-Chr3:12157026 9.50E-53 dispersed
Clacu03g0934 Clacu-Chr3:12157026 Clacu05g1998 Clacu-Chr5:29011872 3.70E-85 dispersed
Clacu03g0934 Clacu-Chr3:12157026 Clacu03g0937 Clacu-Chr3:12250916 6.80E-31 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47428 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0934 - - - 0.0