Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0975 ATGATTGAAAAGGAATTTTTTACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCGTCTGCCATAGACACTCATTCTGGTGAAAAAGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGACGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAGCTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGGTGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCGGAAATGCTGTCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAGAAGGCCAAAAGGTATTTGAGTGGTATGAGAAAAAAGAATCCTATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTTCTTGCATTTGATCCTGAGGACCGTCCTTCTGCGGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAAGAGTACCTTCAAGGTTCTGGGAGTCACTTTCTGTATCCTAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCAATTTTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATTCACCAAGAGATGAAGATGATGATGAAAAACGTAAAATAGAACAGCGAAATGCAGCTTCGGCTGAACGTGCAGCGTTTCAAAGCCCTCCTGGACGTGCTTATCCATTAACTGCTGGAAACGGTTCTGTTCAAGTTGCAAGGAAGTAA 1371 41.06 MIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPILRKHASLPRERIYSPRDEDDDEKRKIEQRNAASAERAAFQSPPGRAYPLTAGNGSVQVARK 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14826104 14829764 + ClG42_03g0097500.10 Clacu03g0975 245540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0975 456 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 348 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu03g0975 456 FunFam Mitogen-activated protein kinase 5 108 - -
Clacu03g0975 456 MobiDBLite consensus disorder prediction 383 456 - -
Clacu03g0975 456 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
Clacu03g0975 456 MobiDBLite consensus disorder prediction 383 426 - -
Clacu03g0975 456 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524(InterPro)
Clacu03g0975 456 FunFam Mitogen-activated protein kinase 331 353 - -
Clacu03g0975 456 FunFam Mitogen-activated protein kinase 102 330 - -
Clacu03g0975 456 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0975 456 CDD STKc_TDY_MAPK 15 352 - -
Clacu03g0975 456 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0975 456 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Clacu03g0975 456 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
Clacu03g0975 456 SMART serkin_6 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0975 456 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0975 Clacu-Chr3:14826104 Clacu07g0657 Clacu-Chr7:11992018 6.90E-255 dispersed
Clacu03g0975 Clacu-Chr3:14826104 Clacu06g1542 Clacu-Chr6:26356467 1.30E-208 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73444 PF00069 Pkinase 1.50E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0975 - - - 0.0