Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0980 ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCCGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGTGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCCGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACCTACAATGACGAACTCCAGCAGAGCAAACGCCAGAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCCGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTAGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCCGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 951 54.78 MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIKPL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15079741 15080691 - ClG42_03g0098000.10 Clacu03g0980 245545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0980 316 CDD B3_DNA 167 267 IPR003340 GO:0003677(InterPro)
Clacu03g0980 316 SMART rav1_2 44 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g0980 316 FunFam AP2 domain-containing protein RAP2.8 43 100 - -
Clacu03g0980 316 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g0980 316 ProSiteProfiles B3 DNA-binding domain profile. 168 272 IPR003340 GO:0003677(InterPro)
Clacu03g0980 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 271 IPR044800 GO:0003700(InterPro)
Clacu03g0980 316 MobiDBLite consensus disorder prediction 137 158 - -
Clacu03g0980 316 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Clacu03g0980 316 Gene3D - 158 274 IPR015300 -
Clacu03g0980 316 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g0980 316 CDD AP2 43 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g0980 316 SMART B3_2 168 270 IPR003340 GO:0003677(InterPro)
Clacu03g0980 316 MobiDBLite consensus disorder prediction 1 23 - -
Clacu03g0980 316 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677(InterPro)
Clacu03g0980 316 MobiDBLite consensus disorder prediction 133 158 - -
Clacu03g0980 316 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0980 Clacu-Chr3:15079741 Clacu06g1314 Clacu-Chr6:24113675 1.80E-44 dispersed
Clacu03g0980 Clacu-Chr3:15079741 Clacu05g2496 Clacu-Chr5:33046443 1.50E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47431 PF02362 B3 1.60E-27 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0980 K09287 - csv:101206328 566.614