Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1036 ATGGGATCCTGCTTGTCTGCAGGAAGTAAGGAGGCCATTACTGGTTCCTCTGTATCTCCTGTGTTGGGAGCAATTAAGCAGAAAGACTCAGACAATGTGTTTGAGCAGCAGAATCAGGGTGAAGCGACAGTACACAGAATTCCTGGTAGGATGTTCTTGAATGGGTCCAGTGAAGTTGCTTCACTTCATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGAATTTTGGCTCCAGAACAGATACATTCTTTTGTGGAGTTTTTGATGGCCATGGTCCTTATGGTCATCTGGTCGCAAAAAGAGTGAGGGATTCTCTTCCCCTGAAACTGACTGCACATTGGGAAGCTAATGAAGACATTTCAGAAGAGTTAGGTTGTAAAACAGAAGCTGTTAACAATGAAGATTCTACCTTAGAAATTAGTTGGAAGGAAGATAGTTCTCCCCTTACGCAGCCAGAAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTTCAGATAATGGATGGAGAACTCAAAATTCAACCAAGTATTGATTGCTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGGTCGAGATCTTGTTATTGGAAACGTTGGGGACTCTCGGGCTGTGCTGGGTACCAGAGATGAGGATAATTCTCTCCAAGCGGTTCAATTGACCATAGATCTCAAGCCAGATATTCCAGGGGAAGCTGAGAGAATTCTCAAATGCAAAGGTCGGGTATTTGCTCATCAGGATGAACCAGAAGTTGCTAGAGTATGGCTTCCAAACAATGATTCCCCCGGGCTGGCGATGGCTCGATCTTTTGGAGACTTTTGCCTCAAGGATTTCGGTCTAATTTCTGTTCCTGAAATATCATATCGTTTTCTGTCTGACAAGGACGAGTTTATAGTTTTAGCTACAGACGGAATTTGGGATGTTCTTTCAAACAAAGAGGTAGTTGACATTGTAGCATCAGCCCCAGCTCGTTGTGCAGCCCGGTCATTGGTTGAGTCTGCAACTGAAGCATGGAGATGCAAGCTTCCTTCTTCCAACATTGACGACTGTGCCGTTGTCTGTCTCTTCCTTGACTCGAACTTGAACGTTATGGCATCAGAGACAAATATTAAATACAAGGAGGTTAAATCAGCAATCCAAGCTGAGACGGCCACGGTAGATGATGTCTCTGGAGAGGACTTAGAGTGGTAG 1221 44.23 MGSCLSAGSKEAITGSSVSPVLGAIKQKDSDNVFEQQNQGEATVHRIPGRMFLNGSSEVASLHTQQGKKGMNQDAMIVWENFGSRTDTFFCGVFDGHGPYGHLVAKRVRDSLPLKLTAHWEANEDISEELGCKTEAVNNEDSTLEISWKEDSSPLTQPEISEKLKESFLKAFQIMDGELKIQPSIDCFCSGTTAVALVKQGRDLVIGNVGDSRAVLGTRDEDNSLQAVQLTIDLKPDIPGEAERILKCKGRVFAHQDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLSDKDEFIVLATDGIWDVLSNKEVVDIVASAPARCAARSLVESATEAWRCKLPSSNIDDCAVVCLFLDSNLNVMASETNIKYKEVKSAIQAETATVDDVSGEDLEW 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18360288 18362945 + ClG42_03g0103600.10 Clacu03g1036 245601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1036 406 CDD PP2Cc 59 367 IPR001932 -
Clacu03g1036 406 SUPERFAMILY PP2C-like 57 368 IPR036457 -
Clacu03g1036 406 PANTHER PROTEIN PHOSPHATASE 46 366 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu03g1036 406 Gene3D - 55 373 IPR036457 -
Clacu03g1036 406 SMART PP2C_4 48 365 IPR001932 -
Clacu03g1036 406 ProSiteProfiles PPM-type phosphatase domain profile. 59 367 IPR001932 -
Clacu03g1036 406 Pfam Protein phosphatase 2C 152 331 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1036 Clacu-Chr3:18360288 Clacu11g1155 Clacu-Chr11:16443496 3.00E-145 dispersed
Clacu03g1036 Clacu-Chr3:18360288 Clacu02g0125 Clacu-Chr2:1330347 8.10E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1036 - - - 0.0