Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1038 ATGGTTTTCACATTGGGAGCTTCTTTCCCTATTATCCACGCCAACAGGCTCCCCACCGCCGTCGTCTCCGCCGCCGCCACCACCGCCAATCCAAGCAGCAACAGCTCTACTTCCCATTTGTTCGAAGCCACCTTCATCCGTCGCGCTGCTGAGATTGCCGATAAGTCAGCCGGATTCACCGCTCCACATCCCAACTATGGCTGCATCATCACCACCACATCCGGTGACGTCGCCGGCGAGGGCTTCCTTTACGGTCAGGGTACCGAATCTGCTGAGCTTCAAGCAATCGAAGCTGCCGGCGAGCGGTGCCGTGGTGCTACGGCGTTTCTCAATTTGGAGTCCAGTGATTGCCCCAGCGACAATACTGCTGTGGCCGCTTTAGTCCAGGCAGGGATTGAAAGAGTAGTTGTTGGAATGCGGCATCCTTTGCAACATCTAAGAGGAAATGCTGTTAGGGCTTTAAGAAGCCAAGGGGTTCTCGTTGATGTTCTTGGAGAGGATCTAAAGAGTAGAACCGTAGAGGAAGCTCGGAAAGCATGTCTCCTTGTTAATGCTCCATTGATTTGTAAAGCTGCTTCTCGAGTGCCTTTCTCTGTACTTAAATATGCCATGACCCTTGATGGGAAAATTGCTGCAAGTTCTGGTCATGCAGCATGGATTAGTGGTGTTTCATCTAGACAACGAGTTTTTCAATTACGAGGAAGAAGTGATGCTGTTATAGTCGGAGGCAATACCGTACGCAGGGATGATCCTAGACTGACTGCAAGACATGGTGGTGGGCATATTCCTCTACGTGTTGTGATGTCAAGGACTCTCAATCTTCCTGAACAAGCAAATGTTTGGGACACAAAGGGTATGTCAACCATGGTTGTAACACAAAGGGGTGCTAAAAGAAGTTTCCAGAAATTGCTTGCATCAAAAGGAGTTGAAGTAGTTGAGTTTGATAATCTAAACCCTCGAGATGTAATGGAATATTTTCATGATCGTGGATTTCTTTCAATTTTGTGGGAGTGCGGAGGAACACTTGCAGCTTCAGCCATTGCGAGTGGAGTAATACATGAGGTTTTTGCATTTGTTGCTCCTAAGATTATTGGGGGGAGGAATGCCCCATCTCCTGTCGGTGAGCTTGGGATGGTTGAAATGTCTCAAGCTTTGGAACTAATTGATGTTGAATATGAGAAGGTTGGAAAGGACATGTTAGTTAGTGGATTTCTTCAACCAATATTAGATGTTGCTCCAGTAATCCCATCCTGTGATGAAACCATTGCAATTGACCCAACAGTTACTCCCTATGAGCCGAGTATTATATTCTTTTACAAAACATGGGATCCTTATGGCGCTTTTTCAAACTTTTCACGTCACCCCATTCAACTCACTGATGAAAATGGCAATGATTGCACTTGGTTGACTGTAGAGCATTATTATCAGGCTCACAAATTTGTCGGTATTGATGATCCTGTAGCTCAGGATTGTGTGGAAAAGATAAAATCGGCAAGAAGTCCAGAAGAAGCAGCAAGGATAGGAAGATCAATGCAGAGGCAGCACCCTAAAATGATACGATCTGATTGGCGAACTGCCAAACTCGACATTATGTACCGAGCATTGAAATGCAAATTTTCAAGTTACCCTCATCTGAAATCTATGCTGCTATCAACTGCTGGATCTGTTCTTGTTGAAGCATCACCACATGATCTTTTCTGGGGTGGAGGCCGAGATGGAGAAGGTCTAAACTACCTTGGAAGACTTCTGATGCAACTGAGAGCCGAGTTCCTTGGCCAGTCATCAACACCGAACGGTAGCAGCACAGAGTTCAACTGA 1818 46.2 MVFTLGASFPIIHANRLPTAVVSAAATTANPSSNSSTSHLFEATFIRRAAEIADKSAGFTAPHPNYGCIITTTSGDVAGEGFLYGQGTESAELQAIEAAGERCRGATAFLNLESSDCPSDNTAVAALVQAGIERVVVGMRHPLQHLRGNAVRALRSQGVLVDVLGEDLKSRTVEEARKACLLVNAPLICKAASRVPFSVLKYAMTLDGKIAASSGHAAWISGVSSRQRVFQLRGRSDAVIVGGNTVRRDDPRLTARHGGGHIPLRVVMSRTLNLPEQANVWDTKGMSTMVVTQRGAKRSFQKLLASKGVEVVEFDNLNPRDVMEYFHDRGFLSILWECGGTLAASAIASGVIHEVFAFVAPKIIGGRNAPSPVGELGMVEMSQALELIDVEYEKVGKDMLVSGFLQPILDVAPVIPSCDETIAIDPTVTPYEPSIIFFYKTWDPYGAFSNFSRHPIQLTDENGNDCTWLTVEHYYQAHKFVGIDDPVAQDCVEKIKSARSPEEAARIGRSMQRQHPKMIRSDWRTAKLDIMYRALKCKFSSYPHLKSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRAEFLGQSSTPNGSSTEFN 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18396327 18403665 - ClG42_03g0103800.10 Clacu03g1038 245603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1038 605 NCBIfam conserved hypothetical protein 436 589 IPR012816 -
Clacu03g1038 605 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 194 406 IPR050765 -
Clacu03g1038 605 CDD NADAR 434 588 IPR012816 -
Clacu03g1038 605 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 40 154 IPR002125 -
Clacu03g1038 605 Pfam RibD C-terminal domain 197 400 IPR002734 GO:0008703(InterPro)|GO:0009231(InterPro)
Clacu03g1038 605 FunFam Swarming motility protein ybiA 429 594 - -
Clacu03g1038 605 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 47 400 IPR004794 GO:0008835(InterPro)|GO:0009231(InterPro)
Clacu03g1038 605 Gene3D Dihydrofolate Reductase, subunit A 188 404 IPR024072 -
Clacu03g1038 605 Pfam NADAR domain 437 590 IPR012816 -
Clacu03g1038 605 SUPERFAMILY YbiA-like 423 591 IPR037238 -
Clacu03g1038 605 SUPERFAMILY Dihydrofolate reductase-like 195 402 IPR024072 -
Clacu03g1038 605 SUPERFAMILY Cytidine deaminase-like 43 163 IPR016193 GO:0003824(InterPro)
Clacu03g1038 605 Gene3D - 427 595 IPR037238 -
Clacu03g1038 605 Gene3D Cytidine Deaminase, domain 2 41 170 - -
Clacu03g1038 605 NCBIfam riboflavin-specific deaminase C-terminal domain 195 402 IPR011549 GO:0008703(InterPro)|GO:0009231(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1038 K11752 - - csv:101206129 1148.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003622 1 2 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 3 2 2 2 2 5 1 47