Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1079 ATGGCCGCGACTAGACCCAAACGGCGGAATCAGTTGTCCACCTCCATCCTACTTCTTTTCTCACTCTCCGTCCTTCTCTCTGTTTCTTCCGGCCGCGAAACCTCCTCCTTCATCAACCACCGCAAGATAGCCGCCGTTGGAACTTCCTCTTCTTCCACTTCGAACTCCAGCTACGCTGTGATTTTGGACGCCGGAAGCTCCGGCAGCCGCGTCCACGTCTTTCACTTCGATGGGAATCTGGATTTGCTGTTCATGGGTTCAGAGATTGAGGTTTTCTCACAGATAAAGCCAGGGTTGAGTTCATACGCGGATGATCCTAAGAAAGCCGCGGATTCTCTAATTCCTTTACTGGAGAAAGCAGAAAATGCGGTTCCTCAGAAAGTGCAATCCGTGACGCAGATTCGCCTAGGGGCGACGGCAGGGCTTAGGTTTCTGGAAGGGGACAGATCTGAGAGGATTTTGGAAGCGGTAAGGGTTGTTCTGAAAACCAGGAGCAGATTCAAGTATGAACAGGATTCAGTTTCCATTTTAGATGGAAATCAAGAAGGCTCTTATCAATGGTTGACAATAAACTATTTGCTAGAGAATTTGGGGAAGAAATACTCAAAAACAGTGGGAGTAATTGATCTTGGAGGTGGGTCTGTTCAAATGGCATATGCAATTTCTGATGAAGATGCAGCAAAGGCACCCATTGCTTCAGATGGAAACACCAAATTTGTTCAAAATTTTTACCTCAAGGGTTCAAATTATAACCTCTATGTTCACAGTTATTTGCGTTACGGTTTACAAGCTGCCCGAGTAGAGATCTTGAAGGTGACCAAAGACCTTGGCAACCCATGCATTTTAGCTGCCTATCAAGGTACATACACATACGGTGGGGAGGAGTACAAAGTGTCAGCCCCAGAGTCAGGGTCGAGCTTCGCCCGTTGCCGGAAGGTAATTCTCGAGGCATTGAAAATCAACAAATCATGTGGCTACAATGAATGCACTTTTGATGGTATATGGAGTGGCGGCGGAGGAGCCGGCCTCAACAATCTCTATGTTGCTTCCTTTTTCTTTGACAAGGCAGCTCAGGCTGGTTTCATAGATTCCAACAAACCAGATGCCATAGTGAAGCCCTTTGATTTCAAGAGAGCAGCAAGGATTGCCTGTCAAACTAAGTATGTTGATGCAAAGGCTAAATATCCTAATGTTTACTCAAGTGACTTGCAATTTGTGTGTTTGGATCTTGTTTACGAGTATGCCCTACTTGTCGATGGATTCGGTATTGATTCTAGAAAAAAGATCACATTGGTGAAGCAAGTGGCATATCATGGTTCTCTTGCAGAGGCAGCATGGCCATTGGGCAATGCTGTAGCAATCCTCTCATCATCAAAGTACTCAACTGCAAATTATCGATGA 1401 45.68 MAATRPKRRNQLSTSILLLFSLSVLLSVSSGRETSSFINHRKIAAVGTSSSSTSNSSYAVILDAGSSGSRVHVFHFDGNLDLLFMGSEIEVFSQIKPGLSSYADDPKKAADSLIPLLEKAENAVPQKVQSVTQIRLGATAGLRFLEGDRSERILEAVRVVLKTRSRFKYEQDSVSILDGNQEGSYQWLTINYLLENLGKKYSKTVGVIDLGGGSVQMAYAISDEDAAKAPIASDGNTKFVQNFYLKGSNYNLYVHSYLRYGLQAARVEILKVTKDLGNPCILAAYQGTYTYGGEEYKVSAPESGSSFARCRKVILEALKINKSCGYNECTFDGIWSGGGGAGLNNLYVASFFFDKAAQAGFIDSNKPDAIVKPFDFKRAARIACQTKYVDAKAKYPNVYSSDLQFVCLDLVYEYALLVDGFGIDSRKKITLVKQVAYHGSLAEAAWPLGNAVAILSSSKYSTANYR 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19506998 19520301 + ClG42_03g0107900.10 Clacu03g1079 245644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1079 466 Gene3D Exopolyphosphatase. Domain 2 178 436 - -
Clacu03g1079 466 FunFam Apyrase 1 178 436 - -
Clacu03g1079 466 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 177 192 IPR000407 GO:0016787(InterPro)
Clacu03g1079 466 Gene3D - 58 451 - -
Clacu03g1079 466 CDD NBD_sugar-kinase_HSP70_actin 60 219 - -
Clacu03g1079 466 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 13 456 IPR000407 GO:0016787(InterPro)
Clacu03g1079 466 Pfam GDA1/CD39 (nucleoside phosphatase) family 52 460 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1079 Clacu-Chr3:19506998 Clacu04g0564 Clacu-Chr4:18970768 5.60E-143 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1079 K14641 - mdm:103428652 508.449