Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1096 ATGTTATTGCAGCAAAAGCTAGTTGAAGACAATGAGAGAGTAAAAATATTCACACAAGAAGAACTTGAAGAAGCAACCAATAACTATAGTGAAAGTAGAATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGAATACTCCATGGTAACACCGTTGTTGCAATCAAAAGGTCAAAGCAAATCGAAGCAAATTGGATCGAACAATTCATCAATGAAGTTATTGTTCTCTCTCGAATCAACTACAAAAATATTGTCAAGCTTCTAGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAATGGGACGCTTTCATATCATATTCACAACAAATTAGATCATGGAGAATCACCTTGCCTTTCATGGGAAACTCGTCTGAAAATTGCTTCTGAAGTTGCTGGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCCTTGAACATTCTTTTGGATGATAAGAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCGATCTCACCTGACCACAAAAGTGTTGGGAACAATTGGGTATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTAAAAAGAGTGATGTTTATAGCTTTGGAGTGTTGATGGTAGAACTTTTAACTCGGAAGCTACCAACTTTTGCCAGAAATGATGGTGGAAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATGGACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGAGGTTGTTAACAATGTGGCAACACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGAAGCAAGTATATTTGGAACTAGAAGGATTGAGAAAGTCTCAAAATTGTATACAAATTATTGAAGAAACTCATTCAACTACTTTTTCATTGAACTCATTTGAGATTAGTGATGACGAGCTTACTAATCCTTCATTCTTTGAGATTTTGATTCTTCCTACTAATGTCCACCCAGAAACACCTGAGAATCTAACCAAACATTCAACAACTTCTGCTCAACCAGTTGTTGATCAAACTCAGGCATATCTCAATCTTTAG 1134 35.45 MLLQQKLVEDNERVKIFTQEELEEATNNYSESRILGEGGYGTVYKGILHGNTVVAIKRSKQIEANWIEQFINEVIVLSRINYKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESPCLSWETRLKIASEVAGAISYMHSIVSTPIFHRDIKSLNILLDDKNSAKVSDFGISRFVSCDRSHLTTKVLGTIGYIDPEYFKSSQYTKKSDVYSFGVLMVELLTRKLPTFARNDGGNLLDYFISLERTNGLVEILDATLVKEERMEVVNNVATLAIKCLRSNGKERPTMKQVYLELEGLRKSQNCIQIIEETHSTTFSLNSFEISDDELTNPSFFEILILPTNVHPETPENLTKHSTTSAQPVVDQTQAYLNL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20340308 20341827 - ClG42_03g0109600.10 Clacu03g1096 245661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1096 377 Pfam Protein kinase domain 29 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1096 377 CDD STKc_IRAK 35 303 - -
Clacu03g1096 377 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 311 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu03g1096 377 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Clacu03g1096 377 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Clacu03g1096 377 FunFam Wall-associated receptor kinase 2 105 322 - -
Clacu03g1096 377 SMART serkin_6 29 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1096 377 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524(InterPro)
Clacu03g1096 377 FunFam Wall-associated receptor kinase 2 2 104 - -
Clacu03g1096 377 ProSiteProfiles Protein kinase domain profile. 29 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1096 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1096 377 Gene3D Transferase(Phosphotransferase) domain 1 105 325 - -
Clacu03g1096 377 Coils Coil 8 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1096 Clacu-Chr3:20340308 Clacu08g0767 Clacu-Chr8:17687025 5.40E-88 dispersed
Clacu03g1096 Clacu-Chr3:20340308 Clacu11g2096 Clacu-Chr11:31737545 1.30E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73447 PF00069 Pkinase 7.70E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1096 - - - 0.0