Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1113 ATGAGAGCAATGAACTCTTCTCTTCCATTTCCTAACCAAACTTTCCTTAACCCTAACCCTAATATCCCTGATTCTTCACATTCCCAACCTCAAAATCCTCCCCTCGACTTGCCTTCTTCCCTTTCCTCCCTCGAAAACCTCATCCATGTCGCCAACCAAACCCTTCAGTCTCTCTCCTACCTCACACTCACCCCAAACTCCTCTCATTACGCCAACAATTCCGATCTTGTTCAGTGCCAATTTGATCGGCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTCCGCTGCCCTTCCGCTTCCCTGCCTCGTATCGACCCGACCCAACTCCTCCAATCCTTGCTTTACCCCCAAACTCTTCATTCATCTCGTCAATTGGTTAATGAAAAGCGCTTCCCTCAAATGCTGCCGGATTCGGATGCCGACCTTTGCTTTTCTCTCAATGATTATACTGATGCTAGTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTGGATGAAATGTCCAAAGTCTTCACTCTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTTGGTAATGACGATCGAGAGATGAAGAGTACGTTGGAGGGGATACGAATACTTCCCTCTGACTTGTGGGTTCTTAGAAGTGAGGTAGAAATTTGGAATGACTACCCCAGTATGTATTCATTTGTTGTGCTTCGGTCCCTATTGGGGTCAGAGATGGCCATGGACAGCCATTTGATGACATGGATCATTGCAAATTCGCCTAGGTATGGTGTCGTTATTGATGTTGCTATGAGGGATCATATATTTTTGCTGTTTAGGCTGTGTTTTATGGCAATCTATAAGGAAGCTTTGGGATTTCAAATTGCATTGGTAAATGGTAATGGAATAGAGGGTGGATCAGCGAATAGCTGTTTTAAGTGTCCAATTTTGATTCAAGTATTAATGTGGCTAGCATCGCAGCTTTCCGTGTTGTATGGGGAAACGAGCGGGAAATTCTTTGCTATTAACATGCTTAGACAATGTATACTGGATGCCGCATTGCGGTTGTTGCTTTTACCATCGGAACCAAAGCCAGCAGAGAGTTTGACTTTAGCAGAGGGTTCTCATAATCTGGAAACTAGTTGTAGTGACACACAGAGTGTGAAGTTGAACGAATTGGATCAGAAAGTTGTAAATAATGGCAATGTTACTGGAAAAGAAACTGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTGGCTGCAGCTGTTGCAGCATTGCATGAGCGGTTCCTACTTGAAGAAAAGATCAAAGCTTTACGATTTTCTCATCTGCAAACTAAATATCAGCGGGTTTCTGAGTATAACTATATCTCTCAAAGAGCTTGTGAAGAGCGTAAAAGACGTTGCAGCTATAGACCTATCATTGAGCATGATGGACTCCCAAAGCAGCAGTTTCACAATGAGGATACAAACAAGACCAAAACAAGGGAGGAGTTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAACGATCAACATTACAGGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGGTGCTTTGTGAAGGGACCTGAAGAGGGAGGGATAAAATCTGAACAACCAACTGATCATAACATTACAAGAAATATTATTGCTGATGGGCACACAAAAGGAAGCAATGACTCGTATGGAGATGCTAGACATAGCTCAAGTCATTCCAAGAAGCAGTCTAACTATGATAGTAGCTACTCGGGATCTCAGAAGCCACAGAAAGGTCATTATGGGCACTATGGCTGTCCAGAAGATGAAAGGAAAAGTTCCAGTAAGGACAAATATGATCGAGATCACTATCATAGGTTCTCAGATCAAAGCAGTAGTCCTAGCCAGTCACACAAATGGAAGAGATATCCAAGTGATCGAGATGATGAGGTGCCGGCAGAAACCAGGCATCATGAAACTAGAAAGCTGTCTTCTAGCAGCTCTAACTTTCATGGTTTTAGATCATCTTCATCCTCAAGGTCTGGGGGTGGTTCAAGTGCAAGGAAGGATGGGCATAAGTTGAGAGCCAGTGATAATCGGAAAAGGAACATGGCAGATAATCACAGCTCAGAGCATTTGGTGTTTAATTCATTTAATGATAGGTACACCCCTTCCGAATGTCATGACCAATTGGAAGATGATTACTCCACTTGTTCTGACCAACAGCCTGCTATATCAGTGAAGTATGAAGGTAGTCGGTCTGCAAATAAACTTGATCAGAGACTTATGACCCACAGTGTTTCAGATCGTCGGTTGCAGGTTGCTCCTGCCTCCATCCTACATTTATGCTGTTAA 2388 43.59 MRAMNSSLPFPNQTFLNPNPNIPDSSHSQPQNPPLDLPSSLSSLENLIHVANQTLQSLSYLTLTPNSSHYANNSDLVQCQFDRRHRVPPHSLFRHSLRCPSASLPRIDPTQLLQSLLYPQTLHSSRQLVNEKRFPQMLPDSDADLCFSLNDYTDASSNFFYVDCPGVVALSNLDEMSKVFTLPRVLAVHCANFVGNDDREMKSTLEGIRILPSDLWVLRSEVEIWNDYPSMYSFVVLRSLLGSEMAMDSHLMTWIIANSPRYGVVIDVAMRDHIFLLFRLCFMAIYKEALGFQIALVNGNGIEGGSANSCFKCPILIQVLMWLASQLSVLYGETSGKFFAINMLRQCILDAALRLLLLPSEPKPAESLTLAEGSHNLETSCSDTQSVKLNELDQKVVNNGNVTGKETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFSHLQTKYQRVSEYNYISQRACEERKRRCSYRPIIEHDGLPKQQFHNEDTNKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQVTRDIIEEYMEEIMKAGGIGCFVKGPEEGGIKSEQPTDHNITRNIIADGHTKGSNDSYGDARHSSSHSKKQSNYDSSYSGSQKPQKGHYGHYGCPEDERKSSSKDKYDRDHYHRFSDQSSSPSQSHKWKRYPSDRDDEVPAETRHHETRKLSSSSSNFHGFRSSSSSRSGGGSSARKDGHKLRASDNRKRNMADNHSSEHLVFNSFNDRYTPSECHDQLEDDYSTCSDQQPAISVKYEGSRSANKLDQRLMTHSVSDRRLQVAPASILHLCC 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20887113 20891795 - ClG42_03g0111300.10 Clacu03g1113 245678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1113 795 MobiDBLite consensus disorder prediction 651 675 - -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 570 723 - -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 697 719 - -
Clacu03g1113 795 PANTHER UNCHARACTERIZED 62 644 IPR051591 -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 676 696 - -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 613 639 - -
Clacu03g1113 795 ProSiteProfiles Zinc finger CHHC U11-48K-type profile. 76 103 IPR022776 -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 593 607 - -
Clacu03g1113 795 MobiDBLite consensus disorder prediction 1 40 - -
Clacu03g1113 795 Pfam U11-48K-like CHHC zinc finger 76 100 IPR022776 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1113 K13156 - - csv:101218930 1174.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0913 Cone1ag1670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01090 Cam03g1136 Cec03g1151 Cco03g1133 Clacu03g1113 Cmu03g1692 Cre03g1400 Lsi06g00751 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007212 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 3 1 37