Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1115 GCTACTTGTGGAATACCTGAAATTGCTTTCTCAACATTTGAGAACATGGAGTATGGAGAAGATTACATGAAACCTGATACTGAGACATATAATTGGGTGATCCAAGCATATACAAGGGCTGAATCTTATGATAGGGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGTCTACAGCCGAACATGAGAACCTATGCGCTCTTGGTAGAGTGTTTTACTAAGTATTGTGTTTTACGAGAAGCTATTAGGCATTTTCGTGCACTAAAAACCTTTGAAGGTGGAACAAAAGCTTTGCATAATGAAGGGAATTTTGGTGACCCACTTTCCTTATATCTTCGAGCTTTATGTAGAGAAGGTAGGGTTGTTGAACTGTTAGATGCCTTGGAGGCTATGGCTAGAGATAACCAACAGATTCCTCCAAGAGCCATGATCTTGAGCAGAAAGTATCGATCACTGGTGAGCTCATGGATTGAACCTTTACAAGAAGAAGCTGAACATGGATTCGAGATAGACTACATTGCAAGATACATTAAAGAGGGTGGACTCACTGGAGAACGCAAGAGATGGGTCCCTCGAAGAGGAAAAACTCCTCTAGATCCTGATGCAGATGGATTCATCTATTCAAATCCTATGGAGACATCCTTTAAGCAACGATGTCTAGAAGACTGGAAGATGTACCACCGAAAGATTTTGAAAACCTTGCAGAATGAAGGACTTGCGGCTCTTGGGGATGCATCTGAAGCTGATTATCATAGAGTCGTGGAGAGATTGAAGAAAATAATAAAGGGTCCTGACCAAAATGTTTTAAAGCCAAAGGCTGCAAGTAAGATGATTGTATCAGAATTAAAAGAAGAATTAGAAGCACAAGGTTTACCAATTGACGGAACTAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGGAGAATTAACCGGTCTCGTGGTCGGCCCCTTTGGGTTCCTCCAGTGGAGGAGGAGGAAGAAGAGGTTGATGAAGAGCTGGATGAACTAATTTCACGAATAAAGCTACACGAAGGAAATACGGAGTTCTGGAAACGCCGCTTTCTCGGAGAAGGCTTGGACAGTAATAATGTTAAACCTTCTGAAGATGATATATCAGAACCTCTTGATTCTTTGGATGATGTTGACACTGTAGAAGACGTTGCAAAGGAGATTGAAGAAGAAGAAGCTGAGGAGGAAGAGGAGGTAGAACCAACTGAGAATCAAGATGGGGAAAGAGTTATTAAGAAGGAAATTGAAGCTAAGAAGCCTCTTCAAATGATAGGTGTTCAATTGTTAAAAGATGTTGACCAAACCACAACGACATCCAAAAAGTCGAGGAGGAGAAGTTCTCGAGCATCACTTGAGGATGATCGTGATGAAGATTGGTTTCCTGAAGATATATTTGAGGCATTTGAGGAGTTGCGAAAGAGGAAAGTCTTTGATGTATCTGACATGTACACAATAGCTGATGTCTGGGGTTGGACTTGGGAGAGAGAACTTAAGAACAGACCTCCCAGGAGGTGGTCACAGGAATGGGAAGTGGAGCTGGCTATTAAAATTATGCACAAGGTGATTGAATTGGGTGGAACACCAACAATTGGCGACTGTGCCATGATCTTGCGAGCTGCCATCAAGGCTCCTGTACCTTCTGCCTTCTTGAAAATCTTGCAGACAACTCATAGTCTTGGCTATGTATTTGGGAGCCCTTTATATGACGAGATTATCACCCTGTGCCTTGATCTTGGGGAACTAGATGCAGCCATTGCGATTGTAGCAGACCTGGAAACAACAGGAATCTTGGTTCCCGATGAAACACTCGATCGGGTCATCTCCGCTAGACAGACGAACGATGCTATGCCCAAGCCTGATTCAGCCATTGATACTACACTAAATGATCACAGTTTAGCCAATGATGATGAATCATAA 1944 42.59 ATCGIPEIAFSTFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNMRTYALLVECFTKYCVLREAIRHFRALKTFEGGTKALHNEGNFGDPLSLYLRALCREGRVVELLDALEAMARDNQQIPPRAMILSRKYRSLVSSWIEPLQEEAEHGFEIDYIARYIKEGGLTGERKRWVPRRGKTPLDPDADGFIYSNPMETSFKQRCLEDWKMYHRKILKTLQNEGLAALGDASEADYHRVVERLKKIIKGPDQNVLKPKAASKMIVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLHEGNTEFWKRRFLGEGLDSNNVKPSEDDISEPLDSLDDVDTVEDVAKEIEEEEAEEEEEVEPTENQDGERVIKKEIEAKKPLQMIGVQLLKDVDQTTTTSKKSRRRSSRASLEDDRDEDWFPEDIFEAFEELRKRKVFDVSDMYTIADVWGWTWERELKNRPPRRWSQEWEVELAIKIMHKVIELGGTPTIGDCAMILRAAIKAPVPSAFLKILQTTHSLGYVFGSPLYDEIITLCLDLGELDAAIAIVADLETTGILVPDETLDRVISARQTNDAMPKPDSAIDTTLNDHSLANDDES 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20975944 21023672 + ClG42_03g0111500.10 Clacu03g1115 245680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1115 647 Gene3D SAP domain 259 322 IPR036361 -
Clacu03g1115 647 SUPERFAMILY SAP domain 279 315 IPR036361 -
Clacu03g1115 647 Coils Coil 387 414 - -
Clacu03g1115 647 Coils Coil 332 352 - -
Clacu03g1115 647 MobiDBLite consensus disorder prediction 397 419 - -
Clacu03g1115 647 MobiDBLite consensus disorder prediction 619 638 - -
Clacu03g1115 647 SMART sap_9 279 313 IPR003034 -
Clacu03g1115 647 MobiDBLite consensus disorder prediction 397 412 - -
Clacu03g1115 647 Pfam SAP domain 280 312 IPR003034 -
Clacu03g1115 647 MobiDBLite consensus disorder prediction 619 647 - -
Clacu03g1115 647 ProSiteProfiles SAP motif profile. 279 313 IPR003034 -
Clacu03g1115 647 PANTHER PSBP-LIKE PROTEIN 1, CHLOROPLASTIC 63 507 - -
Clacu03g1115 647 Gene3D Tetratricopeptide repeat domain 1 202 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1115 Clacu-Chr3:20975944 Clacu10g1792 Clacu-Chr10:31520381 1.40E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01092 Cam03g1138 Cec03g1154 Cco03g1135 Clacu03g1115 Cmu03g1694 Cre03g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009862 1 1 1 1 1 2 1 2 1 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 33