Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g1172 | ATGGAGGATTTCTTAATCTCTCTCTTAATCCTCTTCCTCTTTCTCCTCTCTCTCACTTTCTTCATCCTCTTCCACAAGCACAAATCCTTGTTCTCCTATCCCAACGTTCCTCCCGGCGCCATAGGCTTTCCCATTCTTGGTGAGAGCCTCGAGTTCTTGTCCACTGGCTGGAAAGGCCACCCTGAGAAGTTCATCTTCGACCGTTTGAATAAGTACAAGTCTGATGTCTTCAAAACCTCCATTGTCGGCGTTCCGGCCGCCATTTTCTGCGGCCCTGCCTGCAACAAGTTCCTCTTCTCTAACGAGAATAAACTCGTTACTTCTTGGTGGCCGGATTCCGTTAACAAGATCTTTCCCTCTTCCACTCAGACTAACTCCAAAGTGGAAGCTAAGAAACTCAAGAAATTCCTCCCGCAATTCCTTAAGCCGGAAGCGCTTCAGCGTTATATTGGAATTATGGATGAACTCGCTCAACGCCATTTCGCTTCCTTCTGGGAGAACAGGGAAGAGGTCCTTGTGTTTCCTCTCGCTAAAAGGTTCACATTCTCGCTGGCGTGCCGATTGTTCGTGAGCGTAGACGATGAAATCCAGGTGGAGAGATTATCGAGACCGTTTGAGCACATTGTGGCAGGAATCATATCGTTGCCGATTGATTTACCAGGAACGCCGTTCAATCGAGCAATAAAGGCATCGAATTTCATCAGAAAGGAACTGGTGGCGATCGTGAGGCAGAGGAAATGGGATCTGGCGGAAGGAAAGGCGTCGCCGACGCAGGACATTCTGTCTCACATGCTTCTCACGTGCGATGAGAACGGATTTTACATGAACGAGTCCGATATCGCCGATAAGATTCTGGGGCTGTTGATCGGCGGCCATGACACTACCAGTGTCGCATGCACCTTCATCCTTAAGTTCCTTGCTGAGCTTCCTCATGTGTACGATGGCGTCTACGCGGAGCAAATGGAAATAGCAAAAGCGAAAGCCCCAGGGGAAGCATTGAAATGGGAAGACATAAACAAGATGAAATATTCATGGAATGTGGCCTGTGAGGTTCTAAGAATTGCTTCCCCAGTCCAAGGTGCCTTTAGGGAAGCCTTAAACGACTTCGTTTTTAATGGCTTCTACATTCCCAAGGGCTGGAAGCTATATTGGAGTGCAAATGGAACACACAAAAACCCAGAGTACTTCCCAGAGCCGTACAAGTTTGAGCCAGCAAGATTTGAAGGGAATGGGCCATTGCCCTACACTTACGTGCCTTTTGGGGGAGGGCCAAGGATGTGCCCTGGAAAAGAGTATGCAAAGCTTGAGATTTTGGTGTTCATGCATAATTTGGTCAAGAGATTCAAATGGGCAAAGCTACTTGAAAAGGAGAATATCATTGTTGACCCATTGCCAATCCCTCAAAAAGGTCTCCCCGTTCGCCTTTTTCCTCGTCAACCTCTCTCTCTTTAG | 1452 | 47.87 | MEDFLISLLILFLFLLSLTFFILFHKHKSLFSYPNVPPGAIGFPILGESLEFLSTGWKGHPEKFIFDRLNKYKSDVFKTSIVGVPAAIFCGPACNKFLFSNENKLVTSWWPDSVNKIFPSSTQTNSKVEAKKLKKFLPQFLKPEALQRYIGIMDELAQRHFASFWENREEVLVFPLAKRFTFSLACRLFVSVDDEIQVERLSRPFEHIVAGIISLPIDLPGTPFNRAIKASNFIRKELVAIVRQRKWDLAEGKASPTQDILSHMLLTCDENGFYMNESDIADKILGLLIGGHDTTSVACTFILKFLAELPHVYDGVYAEQMEIAKAKAPGEALKWEDINKMKYSWNVACEVLRIASPVQGAFREALNDFVFNGFYIPKGWKLYWSANGTHKNPEYFPEPYKFEPARFEGNGPLPYTYVPFGGGPRMCPGKEYAKLEILVFMHNLVKRFKWAKLLEKENIIVDPLPIPQKGLPVRLFPRQPLSL | 483 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 22818023 | 22825900 | - | ClG42_03g0117200.10 | Clacu03g1172 | 245737 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g1172 | 483 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 420 | 429 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | P450 superfamily signature | 418 | 427 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | P450 superfamily signature | 290 | 307 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | P450 superfamily signature | 427 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | FunFam | Taxadiene 5-alpha hydroxylase | 27 | 478 | - | - | |
| Clacu03g1172 | 483 | Gene3D | Cytochrome P450 | 27 | 476 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PANTHER | CYTOCHROME P450 26 | 35 | 455 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Clacu03g1172 | 483 | SUPERFAMILY | Cytochrome P450 | 30 | 478 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | CDD | CYP90-like | 68 | 477 | - | - | |
| Clacu03g1172 | 483 | Pfam | Cytochrome P450 | 37 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | E-class P450 group I signature | 385 | 409 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | E-class P450 group I signature | 279 | 296 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | E-class P450 group I signature | 427 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1172 | 483 | PRINTS | E-class P450 group I signature | 417 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1172 | Clacu-Chr3:22818023 | Clacu06g1515 | Clacu-Chr6:26053759 | 1.50E-186 | dispersed | |
| Clacu03g1172 | Clacu-Chr3:22818023 | Clacu08g1754 | Clacu-Chr8:26951111 | 1.00E-62 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g1172 | K20667 | - | csv:101206033 | 859.751 |