Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1192 ATGGATCAGACGGCTCCTAAGGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTCGAAAGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTCGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATTATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCGTTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGTAAAGCAACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGTGAGTTGTTGCAATGGTTGGCAAATATCTGAGGGAATAAGGTTGGTGAGTTTCCTAGGGTACCAAGGAGACGACTCGACTCGTCCAACCAACCCAACCCATGCTCAATAG 1479 43.27 MDQTAPKVARNLGSPESCRKFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGLSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSVSCCNGWQISEGIRLVSFLGYQGDDSTRPTNPTHAQ 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23178893 23189930 + ClG42_03g0119200.10 Clacu03g1192 245757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1192 492 MobiDBLite consensus disorder prediction 374 402 - -
Clacu03g1192 492 Gene3D - 131 173 - -
Clacu03g1192 492 MobiDBLite consensus disorder prediction 315 373 - -
Clacu03g1192 492 ProSiteProfiles IQ motif profile. 131 159 - -
Clacu03g1192 492 PANTHER IQ-DOMAIN 5-RELATED 40 420 - -
Clacu03g1192 492 MobiDBLite consensus disorder prediction 315 449 - -
Clacu03g1192 492 Pfam IQ calmodulin-binding motif 133 152 IPR000048 GO:0005515(InterPro)
Clacu03g1192 492 SMART iq_5 153 174 IPR000048 GO:0005515(InterPro)
Clacu03g1192 492 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Clacu03g1192 492 ProSiteProfiles IQ motif profile. 155 182 - -
Clacu03g1192 492 MobiDBLite consensus disorder prediction 421 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1192 Clacu-Chr3:23178893 Clacu09g2069 Clacu-Chr9:35494288 2.90E-33 dispersed
Clacu03g1192 Clacu-Chr3:23178893 Clacu05g1958 Clacu-Chr5:28721197 2.70E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1192 - - - 0.0