Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1204 ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTGTGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCGGGTGATTACGGATTTGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG 822 47.69 MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23459255 23460980 - ClG42_03g0120400.10 Clacu03g1204 245769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1204 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
Clacu03g1204 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 14 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Clacu03g1204 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Clacu03g1204 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Clacu03g1204 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1204 Clacu-Chr3:23459255 Clacu08g1753 Clacu-Chr8:26947822 1.60E-44 dispersed
Clacu03g1204 Clacu-Chr3:23459255 Clacu04g1276 Clacu-Chr4:26821382 8.00E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1204 K08909 - csv:101202993 529.635