Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1317 ATGACAGGAGTTGCAAATTGCAACCATAGACAATCCTTCAAACGCTGTGGAATGTGCAATGGCGAATTACTCAATCAACCAAAAATTCTCCAAAAGGCTATTGAAGAATTGGACCAAGTAGTTGGAAGAAATAGGTTGGTTCAAGAATTGGATATACCTAATCTCAAGTATCTCATAGCTTGTACTAGAGAATCTTTTCGACTTCATCCATTTTCGCCCTTCAATGTTCCTCATGTTTCCAACTGTGACATTGTTGTGGCTGGCTACTTCGTCCCCAAAGGTAGCCAAGTTTTGTTAGCTCGTCTAGGCCTTGGTCGAAACCCAAGGATTTGGGAGAATCCGATGAGATTTGATCTAGAATGTCATCTAAAAAATGGTACAATTGAATTGAGAATTTCAGAACCCAGCCTACGATTCATCACCTTCACTAGAGGGAGGAGAGGATGCATTGGTACCTCACTTGGCACTAACATTACCTGA 480 41.25 MTGVANCNHRQSFKRCGMCNGELLNQPKILQKAIEELDQVVGRNRLVQELDIPNLKYLIACTRESFRLHPFSPFNVPHVSNCDIVVAGYFVPKGSQVLLARLGLGRNPRIWENPMRFDLECHLKNGTIELRISEPSLRFITFTRGRRGCIGTSLGTNIT 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25595722 25596201 + ClG42_03g0131700.10 Clacu03g1317 245882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1317 159 SUPERFAMILY Cytochrome P450 22 156 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 22 159 IPR051382 -
Clacu03g1317 159 Gene3D Cytochrome P450 18 158 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS E-class P450 group I signature 139 149 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS E-class P450 group I signature 149 159 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS E-class P450 group I signature 100 124 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS E-class P450 group I signature 59 77 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS P450 superfamily signature 140 149 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS P450 superfamily signature 25 38 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS P450 superfamily signature 60 71 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 PRINTS P450 superfamily signature 149 159 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g1317 159 Pfam Cytochrome P450 22 156 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1317 Clacu-Chr3:25595722 Clacu03g1327 Clacu-Chr3:25768719 1.90E-66 dispersed
Clacu03g1317 Clacu-Chr3:25595722 Clacu03g1318 Clacu-Chr3:25620403 7.90E-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1317 - - - 0.0