Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1334 ATGTTTCAAGACGAAGGCACATCCTCCATCACTTCCTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTTAAATCTGAGGAGAGGGGCTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAATCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCAAATATCTCATCTTGCTTCTGCAGATGGTGATACAATGCAGCGAATTGCAGCATATTTCGCCGAGGCTCTGGCGGATAGGATCCTCAAGACTTGGCCTGGTCTTTACAAGGCATTCAACTCTACTAAGATACCAATGGTTTCAGAGAAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCATTCCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGAGAAAAGATGATTCATATAATTGATCTCAATGCTAATGAAACTGCTCAGTGGCTTGCTCTTTTGCAAGTTTTGAGTGTGAGGCCTGAAGGACCTCCACATTTGAGAATCACTGGAGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGATGAAGCCGAGAAATTGGACATCCCGTTTCAATTCAATTCGGTTATCAGCCGACTAGACGATCTTGATATGGAAAAGCTTCGTGTGAAAACTGGGGAGGCTTTGGCCATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTGTGATAATGAAGTCTTGCAAAAGCCATCTCCATCAGCAGCCAAGAGTGCAAATGGAGTTCAATACTCGAGATACCCACATCTGAACCAAACCACCTTGAGTGACTTACTCGACAAGGATTTGGTTAACGGATGTAGTCCAAGTCCCGATTCAGTTTCCTCATCAGCATTATCTCAGGCTAATGTGACGAAGATCGACAGCTTTTTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTCGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTTATGGAGAGATTACTGGAGGCTCTCCACACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGAGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACATGAAAAACAAGAGAAATGGAGTCAACGGTTCGATGTTGCGGGGTTCAGGCATGTGTCTTTGAGTTATTATGGCATGATGCAGGCTCGGAGCTTGCTGCAGGGGTATGGTTGTGATGGTTATAGGATGAAGGAAGAGAATGGCTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCTCGGTTTCGGCTTGGAGATGTTGTAAGTAG 1416 43.86 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEKILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTDEAEKLDIPFQFNSVISRLDDLDMEKLRVKTGEALAINSVLQLHTLLGCDNEVLQKPSPSAAKSANGVQYSRYPHLNQTTLSDLLDKDLVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKQEKWSQRFDVAGFRHVSLSYYGMMQARSLLQGYGCDGYRMKEENGCVMICWQDRPLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25898272 25899687 + ClG42_03g0133400.10 Clacu03g1334 245899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1334 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 467 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
Clacu03g1334 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Clacu03g1334 471 Pfam GRAS domain family 46 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1334 Clacu-Chr3:25898272 Clacu05g2275 Clacu-Chr5:31104180 3.30E-151 dispersed
Clacu03g1334 Clacu-Chr3:25898272 Clacu01g2009 Clacu-Chr1:32012370 1.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47438 PF03514 GRAS 5.30E-142 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1334 - - - 0.0