Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1359 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGTGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCTACACATCTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCTAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACAAACAAGGCCTCAGAATAG 810 45.31 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSVGSYRQDAQKMQHVSSTLPAMHGECGMQSTHLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26360752 26363008 - ClG42_03g0135900.10 Clacu03g1359 245924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1359 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu03g1359 269 MobiDBLite consensus disorder prediction 82 98 - -
Clacu03g1359 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1359 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1359 269 MobiDBLite consensus disorder prediction 203 269 - -
Clacu03g1359 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1359 269 Gene3D - 171 233 - -
Clacu03g1359 269 MobiDBLite consensus disorder prediction 1 17 - -
Clacu03g1359 269 MobiDBLite consensus disorder prediction 206 225 - -
Clacu03g1359 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1359 269 MobiDBLite consensus disorder prediction 1 22 - -
Clacu03g1359 269 MobiDBLite consensus disorder prediction 250 269 - -
Clacu03g1359 269 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1359 269 MobiDBLite consensus disorder prediction 226 249 - -
Clacu03g1359 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Clacu03g1359 269 MobiDBLite consensus disorder prediction 37 98 - -
Clacu03g1359 269 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1359 Clacu-Chr3:26360752 Clacu09g0409 Clacu-Chr9:3617165 6.30E-38 dispersed
Clacu02g2363 Clacu-Chr2:36662381 Clacu03g1359 Clacu-Chr3:26360752 2.30E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47440 PF02045 CBFB_NFYA 1.70E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1359 K08064 - csv:101212860 496.508