Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g1359 | ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGTGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCTACACATCTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCTAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACAAACAAGGCCTCAGAATAG | 810 | 45.31 | MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSVGSYRQDAQKMQHVSSTLPAMHGECGMQSTHLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 26360752 | 26363008 | - | ClG42_03g0135900.10 | Clacu03g1359 | 245924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g1359 | 269 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 16 | 259 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 82 | 98 | - | - | |
Clacu03g1359 | 269 | PRINTS | CCAAT-binding transcription factor subunit B signature | 174 | 196 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g1359 | 269 | PRINTS | CCAAT-binding transcription factor subunit B signature | 205 | 228 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 203 | 269 | - | - | |
Clacu03g1359 | 269 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 174 | 228 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g1359 | 269 | Gene3D | - | 171 | 233 | - | - | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 206 | 225 | - | - | |
Clacu03g1359 | 269 | ProSiteProfiles | NF-YA/HAP2 family profile. | 171 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 250 | 269 | - | - | |
Clacu03g1359 | 269 | SMART | cbf3 | 170 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 226 | 249 | - | - | |
Clacu03g1359 | 269 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 176 | 196 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 37 | 98 | - | - | |
Clacu03g1359 | 269 | MobiDBLite | consensus disorder prediction | 39 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1359 | Clacu-Chr3:26360752 | Clacu09g0409 | Clacu-Chr9:3617165 | 6.30E-38 | dispersed | |
Clacu02g2363 | Clacu-Chr2:36662381 | Clacu03g1359 | Clacu-Chr3:26360752 | 2.30E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47440 | PF02045 | CBFB_NFYA | 1.70E-25 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g1359 | K08064 | - | csv:101212860 | 496.508 |