Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1420 ATGGAAGACGAAGCCTCCTCCAGTTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGGTCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGACAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGGAAAGCGTATTAGGCTATTTGGAGTGCATATTGATTGA 1083 44.88 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSDSSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGGKRIRLFGVHID 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27387931 27389013 - ClG42_03g0142000.10 Clacu03g1420 245985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1420 360 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Clacu03g1420 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1420 360 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Clacu03g1420 360 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Clacu03g1420 360 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1420 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 359 IPR044800 GO:0003700(InterPro)
Clacu03g1420 360 Gene3D - 164 296 IPR015300 -
Clacu03g1420 360 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1420 360 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1420 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Clacu03g1420 360 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Clacu03g1420 360 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Clacu03g1420 360 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1420 Clacu-Chr3:27387931 Clacu06g1314 Clacu-Chr6:24113675 1.90E-82 dispersed
Clacu03g1420 Clacu-Chr3:27387931 Clacu05g2496 Clacu-Chr5:33046443 2.70E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47443 PF02362 B3 6.80E-27 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1420 K09287 - csv:101219913 645.58