Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1429 ATGTTGTGGAGTTGCTTGAACACCTATATTGTTACGGGTTTTGCACCATCTAATCATAATCACAGAATGACACGAGTTGAGGAGTTGTGGGAGCGCTTAGTTCGAGCAGCCTTAAGAAGAGACAGAATTGGCATTGATGCATATGGACGCCCTGAAAGTGGCATTGCTGGGAATGTACCATCTTCACTTGCAAACAATAGGGATATTGACGAAATCTTGAGAGCTGCTGATGAAATCCAAGATGAAGATCCCAATATCTCGAGGATATTATGTGAGCATGCGTATTCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATTCAAAACTGGTTTGATGTCTGTCATTAAGCAAAAGCTAGCCAAGAGGGATGGTGGAACCATAGATAGAAGCCAGGACATTACTCGGTTGCAGGAGTTCTACAAACTATACCGAGAGAAAAATAATGTAGATAAGCTTCGGGAAGATGAAATGAAATTGAGGGAATCTGGTGCTTTTAGTGGTAATCTTGGAGAGTTGGAACGAAAAACGTTGAAGCGAAAAAAAGTCTTTGCAACCCTGAAAGTATTAGGAATGGTACTGGAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATCAGATGCAGCAATGACAGAGGACCTGATTGCATATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCCTCGTTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAATTTTCTGTTCCGGAGACTAGGAGTCCTGATATACTTGACTTTCTACACTTCATTTTTGGATTTCAGAAAGACAATGTGGCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGCCTTCGTATTCCTGAAGAAACTGAACCAAAGTTGGATGAAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGCTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTATACTTTCTTATATGGGGGGAAGCAGCCAACGTCAGATTTCTTCCAGAATGCTTATGCTACATATTTCACCATATGGTTCGGGAAATGGATGAGGTATTGAGGCATCAGATTGCGCAGCCGGCCAAGAGCTGTGAGTCTAAAGATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTACGAGGTTATGGCTGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCACATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCACTTAGATGCTTTGACCTCAGTTGGCCATGGCACAAAGGCAAATCTTTTTTCCAAAAGCCAACACCAAAATCAAAGAATATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACGTTTCTTCATCTTTATCACAGTTTCCATCGTTTATGGATATTTTTGGTTATGATGTTCCAGGCTTTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTCGAAGTTCTGAGTCTTGGTCCGACGTTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCAAGACGTCTTGCTGTCTCTCGAATTTTTCTTCGTTTTCTTTGGTTTAGTATTGCATCAGCTTCGATAACATTTCTTTATGTGAAGGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTTAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTGCAGCTTTGTCTCAGTATCCTCATGCGTATACCTGCTTGCCATCTTTTAACGAATCAATGTGATCGGTGGCCTCTTGTGCGTTTTATCAAGTGGATGCGTCAGGAACGGTACTATGTTGGACGTGGGATGTATGAGAGGACTACTGACTTTATCAAATACATGCTTTTGTGGATTATCATTCTGGGTGGAAAATTTGCATTTGCCTATTTTCTTCAGATCAAGCCTCTTGTTGAACCTACCAGGCTTATTGTAAATATGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAAATAATCATAATGCTTTGACTATTCTTAGCTTATGGGCCCCCGTGGTCGCTATTTATATCTTGGACGTTCATGTGTTCTATACTATTATATCGGCTATTTGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGTGAGATTAGATCATTGGAAGCCCTACATAAGCTGTTCGAGCAGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGTTTTCAAATCGGTCTTCAAGTCAG 2436 40.89 MLWSCLNTYIVTGFAPSNHNHRMTRVEELWERLVRAALRRDRIGIDAYGRPESGIAGNVPSSLANNRDIDEILRAADEIQDEDPNISRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAKRDGGTIDRSQDITRLQEFYKLYREKNNVDKLREDEMKLRESGAFSGNLGELERKTLKRKKVFATLKVLGMVLEQLSDAIPEEMKRLMESDAAMTEDLIAYNIIPLDAPSMTNAIGSLVEVQAAVSALKYFSGLPKLPAEFSVPETRSPDILDFLHFIFGFQKDNVANQREHVVHLLANEQSRLRIPEETEPKLDEAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEAANVRFLPECLCYIFHHMVREMDEVLRHQIAQPAKSCESKDGVSFLDQVICPLYEVMAAEAANNNNGQAPHSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKNMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMMFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRLAVSRIFLRFLWFSIASASITFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLSILMRIPACHLLTNQCDRWPLVRFIKWMRQERYYVGRGMYERTTDFIKYMLLWIIILGGKFAFAYFLQIKPLVEPTRLIVNMRDIRYSWHDFVSKNNHNALTILSLWAPVVAIYILDVHVFYTIISAIWSFLIGARDRLGEIRSLEALHKLFEQFPGAFMDTLHVPLQDRLGFSNRSSSQ 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27500494 27548374 + ClG42_03g0142900.10 Clacu03g1429 245994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1429 812 Gene3D - 55 211 IPR023175 -
Clacu03g1429 812 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 360 467 IPR026899 -
Clacu03g1429 812 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 58 797 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Clacu03g1429 812 SMART FKS1_dom1_2 358 470 IPR026899 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1439 Clacu-Chr3:27721948 0.00E+00 dispersed
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1431 Clacu-Chr3:27594784 1.70E-78 proximal
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1432 Clacu-Chr3:27607211 3.30E-74 proximal
Clacu03g1428 Clacu-Chr3:27470701 Clacu03g1429 Clacu-Chr3:27500494 2.20E-124 tandem
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1430 Clacu-Chr3:27586072 4.20E-21 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1429 K11000 - csv:101216435 1514.21