Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1431 ATGCATATTCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGCAAAAGCTAGCCAAGAAGGAGGGTGGAACCGTAGATAGAAGCCAGGACATTACTCGGTTACAGGAGTTCTACAAACTATACCGAGAGAAAAATAATGTAGATAAGCTTTGGGAAGGTGAAATGAAATTTAGGGAATCTGGTGCTTCCAGTGGTAATCTTGGAAAGTTGGAACGGAAAACGCTGAAGCGAAACAAAGTCTTTGCAACCCTGAAAGTATTAGCAATGGTACTGGAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCAGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTGTGACAAATGCTATTGGGTCCTTGACTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAATTTTCCATTCCGGAGACCAGGAGTCCTGACATGCTTGACTTTCTACACTTCGTTTTTGGATTTCAGGTTTGGATTTCTGTGTTGGGTGGTTGTATAGAACTCAATCCCGTCCGTTAA 618 42.56 MHIHLRKTWILIVKEEVFCNPKLQKLAKKEGGTVDRSQDITRLQEFYKLYREKNNVDKLWEGEMKFRESGASSGNLGKLERKTLKRNKVFATLKVLAMVLEQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSVTNAIGSLTEVQAAVSALKYFSGLPKLPAEFSIPETRSPDMLDFLHFVFGFQVWISVLGGCIELNPVR 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27594784 27600139 + ClG42_03g0143100.10 Clacu03g1431 245996

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1431 K11000 - - csv:101216435 285.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1431 Clacu-Chr3:27594784 Clacu03g1439 Clacu-Chr3:27721948 1.10E-77 dispersed
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1431 Clacu-Chr3:27594784 1.70E-78 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g117 . . . . . . . . . Cmo11g00828 . . . . . . . Bhi02g01622 Tan09g0906 . . Hepe09g1054 . . . . . . . . . . . . Cone11ag1461 Lsi06g00464 . . . . . . . . . . . . . . Cma11g00822 . . . . Cpe04g00852 . . . . . . . Cla03g01330 Cam03g1408 Cec03g1443 Cco03g1435 Clacu03g1431 Cmu03g1990 Cre03g1662 . Csa01g03113 Chy02g01393 Cme02g00461
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1317 . 1 735 Cell Wall Biosynthesis AT5G17420 82.6 0.0e+00 1256.9
Clacu08g0218 . 1 919 Cell Wall Biosynthesis AT5G17420 61.1 0.0e+00 1138.6
Clacu04g0354 . 9 875 Cell Wall Biosynthesis AT5G17420 64.2 0.0e+00 1110.1
Clacu09g0412 . 12 761 Cell Wall Biosynthesis AT5G17420 61.3 1.3e-256 883.2
Clacu05g1852 . 1 678 Cell Wall Biosynthesis AT5G17420 62.2 1.3e-240 830.1
Clacu03g0750 . 487 1077 Cell Wall Biosynthesis AT5G17420 62.6 8.3e-216 747.7
Clacu06g0147 . 1132 1623 Cell Wall Biosynthesis AT5G17420 61.9 5.3e-178 622.1
Clacu06g1871 . 1 1766 Cell Wall Biosynthesis AT3G07160 61.9 0.0e+00 2181.8
Clacu03g1435 . 34 1148 Cell Wall Biosynthesis AT3G07160 70.9 0.0e+00 1601.3
Clacu03g1439 . 1 1123 Cell Wall Biosynthesis AT3G07160 60.7 0.0e+00 1310.0
Clacu03g1440 . 150 932 Cell Wall Biosynthesis AT3G07160 76.3 0.0e+00 1220.3
Clacu03g1429 . 23 802 Cell Wall Biosynthesis AT3G07160 73.6 0.0e+00 1162.1
Clacu03g1432 . 80 223 Cell Wall Biosynthesis AT3G07160 72.0 4.1e-59 228.0
Clacu03g1434 . 7 180 Cell Wall Biosynthesis AT3G07160 65.3 1.3e-57 223.0
Clacu03g1431 . 24 189 Cell Wall Biosynthesis AT3G07160 69.3 2.7e-55 215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014227 0 0 1 0 0 2 1 2 3 0 2 2 0 0 0 1 2 1 0 1 0 0 0 1 3 0 0 0 0 1 23